RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 OR2H2O95918 312 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 AVPP01185 164 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 TK1P04183 234 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 LIPFP07098 398 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 GP2P55259 537 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 RPL31P62899 125 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 PAX8Q06710 450 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 GPR176Q14439 515 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 PIGYQ3MUY2 71 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 C22orf42Q6IC83 251 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 CDH26Q8IXH8 852 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 OSR2Q8N2R0 312 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 OR4D6Q8NGJ1 314 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 OR5D13Q8NGL4 314 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 FOXRED1Q96CU9 486 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 SNX22Q96L94 193 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 UQCC2Q9BRT2 126 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 FAM234AQ9H0X4 552 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 ZNF696Q9H7X3 374 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 STUB1Q9UNE7 303 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 SSR3Q9UNL2 185 aa9.45□□□□□ -0.9
LIMCH1-210ENST00000509454 LOC100506127A0A0U1RQW1 187 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 TRDV1A0A1B0GX56 115 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 TMEM82A0PJX8 343 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 MEX3AA1L020 520 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 K7N7A8 449 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 PDCD5O14737 125 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 TOX4O94842 621 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 GTF2F2P13984 249 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 CD36P16671 472 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 PAX2Q02962 417 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 BLMHQ13867 455 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 ZNF146Q15072 292 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 C11orf91Q3C1V1 193 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 ATAD3CQ5T2N8 411 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 ELP2Q6IA86 826 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 OR8H2Q8N162 312 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 FAM46BQ96A09 425 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 CHCHD6Q9BRQ6 235 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 PPA2Q9H2U2 334 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 BANF2Q9H503 90 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 C19orf12Q9NSK7 152 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 IL36GQ9NZH8 169 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 OPN4Q9UHM6 478 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 ST3GAL6Q9Y274 331 aa9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 NSD1Q96L73 2696 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-210ENST00000509454 TRBV23-1A0A0A0MS06 115 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 A0A1W2PP11 408 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 A0A1W2PPH5 198 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 OR7C1O76099 320 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 FAM157CP0CG43 387 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 HTR2CP28335 458 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 RBM11P57052 281 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 SCGB2A2Q13296 93 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 IL13RA2Q14627 380 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 P2RY14Q15391 338 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 RAB11BQ15907 218 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 PAN3Q58A45 887 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 SYT6Q5T7P8 510 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 ASCL4Q6XD76 172 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 TRAPPC6BQ86SZ2 158 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 CHST4Q8NCG5 386 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 OR4S1Q8NGB4 309 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 TBC1D15Q8TC07 691 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 NEK7Q8TDX7 302 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 WDFY2Q96P53 400 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 SELENOIQ9C0D9 397 aa9.43□□□□□ -0.9
LIMCH1-210ENST00000509454 TRAV40A0A0B4J280 105 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 SMIM30A4D0T7 59 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 SLC33A1O00400 549 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 MGST3O14880 152 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 PSPNO60542 156 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 ZNF737O75373 536 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 MPIG6BO95866 241 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 IFNA2P01563 188 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 UBBP0CG47 229 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 GADD45AP24522 165 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 OR3A1P47881 315 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 ATXN7L3Q14CW9 347 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 Q6P435 159 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 METAP1DQ6UB28 335 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 C17orf107Q6ZR85 190 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 C1orf229Q6ZS94 237 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 PDZD9Q8IXQ8 264 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 TPRX1Q8N7U7 411 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 OR6M1Q8NGM8 313 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 DACT3Q96B18 629 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 POM121Q96HA1 1249 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 CST11Q9H112 138 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 OR51E2Q9H255 320 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 SIRT7Q9NRC8 400 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 TXNL4BQ9NX01 149 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 V9GY05 133 aa9.42□□□□□ -0.9
LIMCH1-210ENST00000509454 A0A0G2JK05 382 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 FUOMA2VDF0 154 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 GEMIN2O14893 280 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 MGMTP16455 207 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 RAB3BP20337 219 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 EPHA1P21709 976 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 PSMD7P51665 324 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 256.1 ms