RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 C9orf57Q5W0N0 161 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ABHD15Q6UXT9 468 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SLC16A13Q7RTY0 426 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 CTU1Q7Z7A3 348 aaKnown RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 NDUFAF3Q9BU61 184 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 PARD6GQ9BYG4 376 aaPredicted RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 LINC00470Q9BZP3 86 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ARNTLO00327 626 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 FBXO45P0C2W1 286 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SMIM10L2AP0DMW4 78 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SMIM10L2BP0DMW5 78 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 PSMB5P28074 263 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 C1orf61Q13536 156 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SURF2Q15527 256 aaPredicted RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 RNFT1Q5M7Z0 435 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 Q5PR19 223 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 LURAP1LQ8IV03 231 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 HGDQ93099 445 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ZNF479Q96JC4 524 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SLC45A1Q9Y2W3 748 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ROBO2Q9HCK4 1378 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 CHD3Q12873 2000 aaKnown RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 DIRC3C9JPN6 131 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 GRPP07492 148 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 YPEL5P62699 121 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ID3Q02535 119 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 P2RY6Q15077 328 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 PYCR3Q53H96 274 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 FBXO46Q6PJ61 603 aaPredicted RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 GFRALQ6UXV0 394 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 DLK2Q6UY11 383 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 APOBEC3DQ96AK3 386 aaPredicted RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 DNAJC4Q9NNZ3 241 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 CNIH4Q9P003 139 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 A0A1W2PQH9 124 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 TMEM210A6NLX4 147 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 TSPAN31Q12999 210 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 FAM27D1Q5T7N8 215 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 Q6AWC8 147 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 PLAG1Q6DJT9 500 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 RGMBQ6NW40 437 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 RASL11AQ6T310 242 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 PLPPR1Q8TBJ4 325 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 LSM10Q969L4 123 aaKnown RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 MRPL24Q96A35 216 aaKnown RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 SEMA6BQ9H3T3 888 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 GPR27Q9NS67 375 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 NEO1Q92859 1461 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SNRPGP15A8MWD9 76 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ZNF253O75346 499 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ACRP10323 421 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 PIGFQ07326 219 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SMIM20Q8N5G0 67 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SH3RF2Q8TEC5 729 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ABHD3Q8WU67 409 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 TRAV8-2A0A0B4J237 113 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 A0A0G2JLM5 398 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 TMEM88BA6NKF7 163 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 J3QW42 95 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SFT2D2O95562 160 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 HLA-DQB1P01920 261 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 FOLR2P14207 255 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 HOXB4P17483 251 aaPredicted RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 ZP4Q12836 540 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 C10orf111Q8N326 155 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 OR52N1Q8NH53 320 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 RELTQ969Z4 430 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 TAAR3PQ9P1P4 343 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ATRNO75882 1429 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 POLEQ07864 2286 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 CAMSAP1Q5T5Y3 1602 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 C7orf72A4D263 438 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 ETHE1O95571 254 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 LGALS2P05162 132 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SDC1P18827 310 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SRIP30626 198 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 RELAQ04206 551 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 TMEM91Q6ZNR0 172 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 TTC9CQ8N5M4 171 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 SLC35B3Q9H1N7 401 aa5.22□□□□□ -1.57
USF3-204ENST00000496826 TIMM13Q9Y5L4 95 aaPredicted RBP5.22□□□□□ -1.57
USF3-204ENST00000496826 TRIP11Q15643 1979 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 TRBV23-1A0A0A0MS06 115 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 CRLF1O75462 422 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 IL6RP08887 468 aaPredicted RBP5.21□□□□□ -1.57
USF3-204ENST00000496826 M6PRP20645 277 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 GPX3P22352 226 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 SSBP2P81877 361 aaPredicted RBP5.21□□□□□ -1.57
USF3-204ENST00000496826 ACVR1Q04771 509 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 LINC00596Q86U02 117 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 CNIH3Q8TBE1 160 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 RARRES2Q99969 163 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 FSCN3Q9NQT6 498 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 MARCH4Q9P2E8 410 aaPredicted RBP5.21□□□□□ -1.57
USF3-204ENST00000496826 TTC37Q6PGP7 1564 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 CXorf51AA0A1B0GTR3 108 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 PTGESO14684 152 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 CBR3O75828 277 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 HPXP02790 462 aa5.21□□□□□ -1.57
USF3-204ENST00000496826 EVI2AP22794 236 aa5.21□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms