RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 PPP1R3CQ9UQK1 317 aa10.16□□□□□ -0.78
UPF3A-210ENST00000493727 CMYA5Q8N3K9 4069 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 PKD1L1Q8TDX9 2849 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 LYNX1G3V0Z9 82 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 IFNL4K9M1U5 179 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 CDC14BO60729 498 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 TMEM127O75204 238 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 ZNF780AO75290 641 aaPredicted RBP10.15□□□□□ -0.78
UPF3A-210ENST00000493727 CRTAPO75718 401 aaPredicted RBP10.15□□□□□ -0.78
UPF3A-210ENST00000493727 KDM4BO94953 1096 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 CSTBP04080 98 aaKnown RBP10.15□□□□□ -0.78
UPF3A-210ENST00000493727 LYNX1P0DP58 116 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 SERPINA2P20848 420 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 CFPP27918 469 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 IL24Q13007 206 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 GPR176Q14439 515 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 SPRNQ5BIV9 151 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 FAM76BQ5HYJ3 339 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 SAXO1Q8IYX7 474 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 BOLLQ8N9W6 283 aaKnown RBP10.15□□□□□ -0.78
UPF3A-210ENST00000493727 PXT1Q8NFP0 134 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 OR10K1Q8NGX5 313 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 CLDND2Q8NHS1 167 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 MCFD2Q8NI22 146 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 TBC1D15Q8TC07 691 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 LRRC29Q8WV35 223 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 ACOT12Q8WYK0 555 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 EMG1Q92979 244 aaKnown RBP10.15□□□□□ -0.78
UPF3A-210ENST00000493727 CEP19Q96LK0 163 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 MRI1Q9BV20 369 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 C6orf62Q9GZU0 229 aaPredicted RBP10.15□□□□□ -0.78
UPF3A-210ENST00000493727 CST11Q9H112 138 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 TLNRD1Q9H1K6 362 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 GCM1Q9NP62 436 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 TREM2Q9NZC2 230 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 COMMD3Q9UBI1 195 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 GHRLQ9UBU3 117 aa10.15□□□□□ -0.78
UPF3A-210ENST00000493727 PRKDCP78527 4128 aaKnown RBP10.15□□□□□ -0.78
UPF3A-210ENST00000493727 IGHV1-69-2A0A0G2JMI3 117 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 RGS5O15539 181 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 PPIHO43447 177 aaKnown RBP10.14□□□□□ -0.79
UPF3A-210ENST00000493727 AKR7A2O43488 359 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 RHBDL1O75783 438 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 NXPH2O95156 264 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 PTBP3O95758 552 aaKnown RBP10.14□□□□□ -0.79
UPF3A-210ENST00000493727 MPIG6BO95866 241 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 PAHP00439 452 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 MSMBP08118 114 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 CALCBP10092 127 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 BCL3P20749 454 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 COL8A2P25067 703 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 MPZP25189 248 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 HFEQ30201 348 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 ZNF404Q494X3 552 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 CRIP3Q6Q6R5 217 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 FIP1L1Q6UN15 594 aaKnown RBP10.14□□□□□ -0.79
UPF3A-210ENST00000493727 WDR82Q6UXN9 313 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 C1QL2Q7Z5L3 287 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 LYPD6Q86Y78 171 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 Q8IYB0 196 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 C1orf87Q8N0U7 546 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.14□□□□□ -0.79
UPF3A-210ENST00000493727 OR10Z1Q8NGY1 313 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 ZFAND2BQ8WV99 257 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 CCL17Q92583 94 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 FAM46BQ96A09 425 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 SLC25A28Q96A46 364 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 TMEM186Q96B77 213 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 ZNF488Q96MN9 340 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 KRTAP9-2Q9BYQ4 174 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 KCNK15Q9H427 330 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 RNF7Q9UBF6 113 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 FBLN5Q9UBX5 448 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 ETV7Q9Y603 341 aa10.14□□□□□ -0.79
UPF3A-210ENST00000493727 TGP01266 2768 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 TRAV20A0A0B4J274 112 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 TMEM272A0A1B0GTI8 110 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 CYB5R3P00387 301 aaPredicted RBP10.13□□□□□ -0.79
UPF3A-210ENST00000493727 PGA5P0DJD9 388 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 CD37P11049 281 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 GTF2F2P13984 249 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 PRKACAP17612 351 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 GLRA1P23415 457 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 BMXP51813 675 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 SNU13P55769 128 aaKnown RBP10.13□□□□□ -0.79
UPF3A-210ENST00000493727 SMIM21Q3B7S5 101 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 C2orf76Q3KRA6 126 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 OR10K2Q6IF99 312 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 OR2W3Q7Z3T1 314 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 C11orf53Q8IXP5 236 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 SAMD12Q8N8I0 201 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 POC1AQ8NBT0 407 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 KCNG3Q8TAE7 436 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 Q8TCH9 128 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 YIPF5Q969M3 257 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 RAB39BQ96DA2 213 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 GAL3ST1Q99999 423 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 TMEM59Q9BXS4 323 aa10.13□□□□□ -0.79
UPF3A-210ENST00000493727 SLIRPQ9GZT3 109 aaKnown RBP10.13□□□□□ -0.79
UPF3A-210ENST00000493727 BANF2Q9H503 90 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms