RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 MFGE8Q08431 387 aaPredicted RBP11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 ZNF146Q15072 292 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 MICAQ29983 383 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 CXorf66Q5JRM2 361 aaPredicted RBP11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 ADAMTSL5Q6ZMM2 481 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 OR56B4Q8NH76 319 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 C4orf3Q8WVX3 66 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 ASB17Q8WXJ9 295 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 EMG1Q92979 244 aaKnown RBP11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 TOMM40LQ969M1 308 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 SLAMF9Q96A28 289 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 RPEQ96AT9 228 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 CMTM5Q96DZ9 223 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 TM2D3Q9BRN9 247 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 CADM1Q9BY67 442 aaKnown RBP11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 SLC7A11Q9UPY5 501 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 AMMECR1Q9Y4X0 333 aaPredicted RBP11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 U3KQV3 271 aa11.15□□□□□ -0.62
PRPF40A-211ENST00000493468 A0A1B0GTI1 187 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 A0A1W2PPI3 338 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 FAM172BPA6NC97 362 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 PRR32B1ATL7 298 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 VEGFCP49767 419 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 SPIN3Q5JUX0 258 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 FAM27D1Q5T7N8 215 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 ELMOD2Q8IZ81 293 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 TRMT10AQ8TBZ6 339 aaKnown RBP11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 IL36RNQ9UBH0 155 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 TMEM14AQ9Y6G1 99 aa11.14□□□□□ -0.63
PRPF40A-211ENST00000493468 IGKV1-27A0A075B6S5 117 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 TRBV2A0A0J9YWF9 115 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 FAM230AA0A1W2PPH8 454 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 LOC110117498-PIK3R3F6TDL0 507 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 H3BN98 237 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 HCKP08631 526 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 CCL1P22362 96 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 PTGFRP43088 359 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 HCCSP53701 268 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 GPR50Q13585 617 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 HES1Q14469 280 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 RBM39Q14498 530 aaKnown RBP11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 KPNB1Q14974 876 aaKnown RBP11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 SLC25A26Q70HW3 274 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 OVCH2Q7RTZ1 564 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 ZNF429Q86V71 674 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 CPOQ8IVL8 374 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 OR8H3Q8N146 312 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 OR4D6Q8NGJ1 314 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 OR9G1Q8NH87 305 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 NIPSNAP1Q9BPW8 284 aa11.13□□□□□ -0.63
PRPF40A-211ENST00000493468 ENTPD6O75354 484 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 JTBO76095 146 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 CSN2P05814 226 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 GPR12P47775 334 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 RAB7AP51149 207 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 FUT6P51993 359 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 RPS7P62081 194 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 PPP1R8Q12972 351 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 GK3PQ14409 553 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 BCL2L15Q5TBC7 163 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 TGIF2LXQ8IUE1 241 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 FAM58AQ8N1B3 248 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 BBS1Q8NFJ9 593 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 HRASLS5Q96KN8 279 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 REEP1Q9H902 201 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 LIN7CQ9NUP9 197 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 RBFOX1Q9NWB1 397 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 SAMHD1Q9Y3Z3 626 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 R4GMQ9 66 aa11.12□□□□□ -0.63
PRPF40A-211ENST00000493468 ODAMA1E959 279 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 A6NIN4 97 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 LINC01548A6NM66 108 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 ZNF729A6NN14 1252 aaPredicted RBP11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 GATBO75879 557 aaKnown RBP11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 IGHG4P01861 327 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 HMGN1P05114 100 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 OR8U8P0C7N1 319 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 PRDX6P30041 224 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 CFHR3Q02985 330 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 EBI3Q14213 229 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 UBE2V2Q15819 145 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 OR10G2Q8NGC3 310 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 MYOZ3Q8TDC0 251 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 RNFT2Q96EX2 444 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 CHST5Q9GZS9 411 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 ABCG5Q9H222 651 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 PLEKHA1Q9HB21 404 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 ZNF580Q9UK33 172 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 OR52A1Q9UKL2 312 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 IKZF2Q9UKS7 526 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 COPS3Q9UNS2 423 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 HERC2O95714 4834 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 ALMS1Q8TCU4 4167 aa11.11□□□□□ -0.63
PRPF40A-211ENST00000493468 J3QR06 171 aa11.1□□□□□ -0.63
PRPF40A-211ENST00000493468 LDLRAD4O15165 306 aa11.1□□□□□ -0.63
PRPF40A-211ENST00000493468 RRP9O43818 475 aaKnown RBP11.1□□□□□ -0.63
PRPF40A-211ENST00000493468 IGKV1D-33P01593 117 aa11.1□□□□□ -0.63
PRPF40A-211ENST00000493468 IGKV1-33P01594 117 aa11.1□□□□□ -0.63
PRPF40A-211ENST00000493468 DUSP1P28562 367 aa11.1□□□□□ -0.63
PRPF40A-211ENST00000493468 GLIPR1P48060 266 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms