RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FXYD4P59646 89 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 THOC7Q6I9Y2 204 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 Q6ZS49 121 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 DCUN1D4Q92564 292 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 WNT2BQ93097 391 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 TAAR6Q96RI8 345 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 CDH20Q9HBT6 801 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 POM121CA8CG34 1229 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 KCNAB3O43448 404 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 NAPSAO96009 420 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 PRKACAP17612 351 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 NBL1P41271 181 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 PPP1CBP62140 327 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 IL24Q13007 206 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 IL15RAQ13261 267 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 MRPL49Q13405 166 aaKnown RBP18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 TSC22D1Q15714 1073 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 AANATQ16613 207 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 RGS7BPQ6MZT1 257 aaPredicted RBP18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 VWA1Q6PCB0 445 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 MARVELD3Q96A59 401 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 MOB3AQ96BX8 217 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 PIK3IP1Q96FE7 263 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 CXorf58Q96LI9 332 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 ZNF488Q96MN9 340 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 OR51I2Q9H344 312 aa18.04■□□□□ 0.48
CCDC88B-208ENST00000492980 LYL1P12980 280 aa18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 GLP1RP43220 463 aa18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 LUMP51884 338 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 RBM39Q14498 530 aaKnown RBP18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 ACSF3Q4G176 576 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 INO80CQ6PI98 192 aaPredicted RBP18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 CCDC120Q96HB5 630 aa18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 PKIBQ9C010 78 aa18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 LHX6Q9UPM6 363 aa18.03■□□□□ 0.48
CCDC88B-208ENST00000492980 COX5AP20674 150 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 DUSP1P28562 367 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 ZNF169Q14929 603 aaPredicted RBP18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 IGFBP7Q16270 282 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 SRSF7Q16629 238 aaKnown RBP eCLIP18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 PRSS54Q6PEW0 395 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 ZADH2Q8N4Q0 377 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 DMRTA2Q96SC8 542 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 OR2J1Q9GZK6 312 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 PLK3Q9H4B4 646 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 NAA60Q9H7X0 242 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 Q9N2K0 584 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 MED9Q9NWA0 146 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 ASPMQ8IZT6 3477 aa18.02■□□□□ 0.48
CCDC88B-208ENST00000492980 hCG_1807616A0A1W2PRN6 198 aa18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 AADACP22760 399 aa18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 UCP3P55916 312 aa18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 ERVS71-1P61550 626 aa18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 ABCA11PQ4W5N1 156 aa18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 IGSF11Q5DX21 431 aa18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 LINC00596Q86U02 117 aa18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 RRNAD1Q96FB5 475 aaKnown RBP18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 ZNF471Q9BX82 626 aaPredicted RBP18.02■□□□□ 0.47
CCDC88B-208ENST00000492980 ESPL1Q14674 2120 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 ANGPTL6Q8NI99 470 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 OR5AC2Q9NZP5 309 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 I3L521 148 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 HSPB6O14558 160 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 HOXB1P14653 301 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 FOXF2Q12947 444 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 RAB32Q13637 225 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 SLC38A6Q8IZM9 456 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 RTN4IP1Q8WWV3 396 aaPredicted RBP18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 GALNT14Q96FL9 552 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 ARPC5LQ9BPX5 153 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 REG4Q9BYZ8 158 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 SLC2A9Q9NRM0 540 aa18.01■□□□□ 0.47
CCDC88B-208ENST00000492980 J3QT63 122 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 RHBDL1O75783 438 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 PDGFAP04085 211 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 IL13RA2Q14627 380 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 PHLDA2Q53GA4 152 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 OR2A2Q6IF42 318 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 WDR86Q86TI4 376 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 FAM58AQ8N1B3 248 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 SLC25A40Q8TBP6 338 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 BOD1Q96IK1 185 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 RSRP1Q9BUV0 290 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 RTL8AQ9BWD3 113 aa18■□□□□ 0.47
CCDC88B-208ENST00000492980 AHRRA9YTQ3 701 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 CBR1P16152 277 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 HERV-K104P61576 105 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 TMEM187Q14656 261 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 IGFL3Q6UXB1 125 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 FAM219AQ8IW50 185 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 C17orf78Q8N4C9 275 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 WDR31Q8NA23 367 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 SUMF2Q8NBJ7 301 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 RELL2Q8NC24 303 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 C1orf162Q8NEQ5 155 aaPredicted RBP17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 OR1S1Q8NH92 325 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 NEK7Q8TDX7 302 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 SPACA1Q9HBV2 294 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 GSKIPQ9P0R6 139 aa17.99■□□□□ 0.47
CCDC88B-208ENST00000492980 DKK4Q9UBT3 224 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms