RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 FAM166AQ6J272 317 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 SFXN4Q6P4A7 337 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 ZNF788Q6ZQV5 615 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 SLC16A12Q6ZSM3 486 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 LINC00596Q86U02 117 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 CD177Q8N6Q3 437 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 ASCC1Q8N9N2 400 aaKnown RBP8.58□□□□□ -1.04
SKA1-204ENST00000488454 Q8NFD4 153 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 OR51D1Q8NGF3 324 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 FAM46BQ96A09 425 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 SLC25A28Q96A46 364 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 SDSLQ96GA7 329 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 URM1Q9BTM9 101 aaKnown RBP8.58□□□□□ -1.04
SKA1-204ENST00000488454 MRI1Q9BV20 369 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 SSBP3Q9BWW4 388 aaPredicted RBP8.58□□□□□ -1.04
SKA1-204ENST00000488454 KRTAP4-6Q9BYQ5 205 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 SELENOIQ9C0D9 397 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 BANF2Q9H503 90 aa8.58□□□□□ -1.04
SKA1-204ENST00000488454 B4DSR2 109 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 DVL1O14640 695 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 SIGLEC5O15389 551 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 OR7C1O76099 320 aaPredicted RBP8.57□□□□□ -1.04
SKA1-204ENST00000488454 MGMTP16455 207 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 NDUFB7P17568 137 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 GABRR1P24046 479 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 TGFBR1P36897 503 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 CEBPDP49716 269 aaPredicted RBP8.57□□□□□ -1.04
SKA1-204ENST00000488454 RORCP51449 518 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 RBM11P57052 281 aaKnown RBP8.57□□□□□ -1.04
SKA1-204ENST00000488454 COL10A1Q03692 680 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 BLMHQ13867 455 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 MPV17LQ2QL34 196 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 TMEM249Q2WGJ8 235 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 PIGYQ3MUY2 71 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 NHLRC3Q5JS37 347 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 OR2W3Q7Z3T1 314 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 CIARTQ8N365 385 aaPredicted RBP8.57□□□□□ -1.04
SKA1-204ENST00000488454 LINC01356Q8N9X3 169 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 CHST4Q8NCG5 386 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 ZNRF1Q8ND25 227 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 TMEM185AQ8NFB2 350 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 OR51T1Q8NGJ9 327 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 OR5D13Q8NGL4 314 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 ST8SIA4Q92187 359 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 SLC25A46Q96AG3 418 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 C18orf12Q96KH6 178 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 SNX22Q96L94 193 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 GAFA1Q96PS6 74 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 TMEM59Q9BXS4 323 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 FAM234AQ9H0X4 552 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 DCSTAMPQ9H295 470 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 NDUFA13Q9P0J0 144 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 IL36RNQ9UBH0 155 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 SLC25A10Q9UBX3 287 aaPredicted RBP8.57□□□□□ -1.04
SKA1-204ENST00000488454 RAB22AQ9UL26 194 aa8.57□□□□□ -1.04
SKA1-204ENST00000488454 CHD3Q12873 2000 aaKnown RBP8.56□□□□□ -1.04
SKA1-204ENST00000488454 LOC105371242A0A075B767 164 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 A0A096LNT2 108 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 A0A0G2JK05 382 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 A0A1W2PP11 408 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 METTL21EPA6NDL7 271 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 TMEM14DPA8MWL7 114 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 F5H0A9 414 aaPredicted RBP8.56□□□□□ -1.04
SKA1-204ENST00000488454 SIRPB1O00241 398 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 GEMIN2O14893 280 aaKnown RBP8.56□□□□□ -1.04
SKA1-204ENST00000488454 ECDO95905 644 aaPredicted RBP8.56□□□□□ -1.04
SKA1-204ENST00000488454 OR2H2O95918 312 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 TGFAP01135 160 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 TFF1P04155 84 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 TK1P04183 234 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 INHBBP09529 407 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 SLC2A2P11168 524 aaPredicted RBP8.56□□□□□ -1.04
SKA1-204ENST00000488454 FOSL1P15407 271 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 AMY2BP19961 511 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 CFPP27918 469 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 IL2RGP31785 369 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 SOX6P35712 828 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 LCN2P80188 198 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 PDCD1Q15116 288 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 TAF9Q16594 264 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 ATAD3CQ5T2N8 411 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 WDR25Q64LD2 544 aaPredicted RBP8.56□□□□□ -1.04
SKA1-204ENST00000488454 OR10K2Q6IF99 312 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 NR2C2APQ86WQ0 139 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 FAM216BQ8N7L0 139 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 TMEM104Q8NE00 496 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 ISOC1Q96CN7 298 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 COX4I2Q96KJ9 171 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 SPACA1Q9HBV2 294 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 LPAR2Q9HBW0 351 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 ABRACLQ9P1F3 81 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 CTSZQ9UBR2 303 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 OR5V1Q9UGF6 321 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 ZNF222Q9UK12 451 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 MAB21L2Q9Y586 359 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 CEPT1Q9Y6K0 416 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 CSMD1Q96PZ7 3565 aa8.56□□□□□ -1.04
SKA1-204ENST00000488454 TMEM272A0A1B0GTI8 110 aa8.55□□□□□ -1.04
SKA1-204ENST00000488454 SMIM31A0A1B0GVY4 71 aa8.55□□□□□ -1.04
SKA1-204ENST00000488454 FUOMA2VDF0 154 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms