RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 POM121L2Q96KW2 1035 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 CLCF1Q9UBD9 225 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 ICE1Q9Y2F5 2266 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 SPTA1P02549 2419 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 CACNA1AO00555 2505 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 FIGNL2A6NMB9 653 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 H0YIZ8 118 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 SDCBPO00560 298 aaPredicted RBP12.43□□□□□ -0.42
CHD3-211ENST00000481999 KCNAB3O43448 404 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 IGHG3P01860 377 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 LYL1P12980 280 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 IGHV1-2P23083 117 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 NPBWR2P48146 333 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 ERVS71-1P61550 626 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 ANKRD55Q3KP44 614 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 TMEM42Q69YG0 159 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 ATRAIDQ6UW56 229 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 ZSCAN4Q8NAM6 433 aaPredicted RBP12.43□□□□□ -0.42
CHD3-211ENST00000481999 OR1S2Q8NGQ3 325 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 EMG1Q92979 244 aaKnown RBP12.43□□□□□ -0.42
CHD3-211ENST00000481999 RRNAD1Q96FB5 475 aaKnown RBP12.43□□□□□ -0.42
CHD3-211ENST00000481999 PRDM14Q9GZV8 571 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 ASF1BQ9NVP2 202 aa12.43□□□□□ -0.42
CHD3-211ENST00000481999 NCOR2Q9Y618 2525 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 GEMIN2O14893 280 aaKnown RBP12.42□□□□□ -0.42
CHD3-211ENST00000481999 NUPL2O15504 423 aaKnown RBP12.42□□□□□ -0.42
CHD3-211ENST00000481999 PET100P0DJ07 73 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 IL32P24001 234 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 RBP2P50120 134 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 ZNF585AQ6P3V2 769 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 METTL8Q9H825 291 aaKnown RBP12.42□□□□□ -0.42
CHD3-211ENST00000481999 ZGRF1Q86YA3 2104 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 NBASA2RRP1 2371 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 SHANK1Q9Y566 2161 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 GPM6AP51674 278 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 RSU1Q15404 277 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 NRN1LQ496H8 165 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 FAM122CQ6P4D5 195 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 RNF141Q8WVD5 230 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 HPSE2Q8WWQ2 592 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 BCL2L2Q92843 193 aaPredicted RBP12.42□□□□□ -0.42
CHD3-211ENST00000481999 C2orf50Q96LR7 162 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 FAAP24Q9BTP7 215 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 TMEM100Q9NV29 134 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 IL36RNQ9UBH0 155 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 ATRXP46100 2492 aa12.42□□□□□ -0.42
CHD3-211ENST00000481999 MPTX1A8MV57 137 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 GLRA1P23415 457 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 AQP10Q96PS8 301 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 REPIN1Q9BWE0 567 aaKnown RBP12.41□□□□□ -0.42
CHD3-211ENST00000481999 CYTL1Q9NRR1 136 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 ZNF701Q9NV72 531 aaPredicted RBP12.41□□□□□ -0.42
CHD3-211ENST00000481999 WASF3Q9UPY6 502 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 C14orf166Q9Y224 244 aaKnown RBP12.41□□□□□ -0.42
CHD3-211ENST00000481999 NUDT19A8MXV4 375 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 CEACAM4O75871 244 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 RPS2P15880 293 aaKnown RBP12.41□□□□□ -0.42
CHD3-211ENST00000481999 CTRB1P17538 263 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 ECI1P42126 302 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 IDH3GP51553 393 aaPredicted RBP12.41□□□□□ -0.42
CHD3-211ENST00000481999 CTRB2Q6GPI1 263 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 SLC25A26Q70HW3 274 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 C5orf24Q7Z6I8 188 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 POC1AQ8NBT0 407 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 SPSB4Q96A44 273 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 GMPPAQ96IJ6 420 aaPredicted RBP12.41□□□□□ -0.42
CHD3-211ENST00000481999 Q96M66 194 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 SCNM1Q9BWG6 230 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 PRR13Q9NZ81 148 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 MEMO1Q9Y316 297 aa12.41□□□□□ -0.42
CHD3-211ENST00000481999 ZNF816-ZNF321PA0A0X1KG74 233 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 DHRS7CA6NNS2 312 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 TOR1AO14656 332 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 AGFG2O95081 481 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 CSTBP04080 98 aaKnown RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 KIR2DL2P43627 348 aaPredicted RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 DAZAP2Q15038 168 aaPredicted RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 MRPL21Q7Z2W9 205 aaKnown RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 FBXL14Q8N1E6 418 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 ZNF611Q8N823 705 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 OR51F2Q8NH61 342 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 ARL11Q969Q4 196 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 SPSB1Q96BD6 273 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 DNAJB11Q9UBS4 358 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 DNASE2O00115 360 aaPredicted RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 RRP8O43159 456 aaKnown RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 XRCC2O43543 280 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 OPRM1P35372 400 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 HOXA4Q00056 320 aaPredicted RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 PRDX4Q13162 271 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 ZNF169Q14929 603 aaPredicted RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 CNN3Q15417 329 aaKnown RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 STK11Q15831 433 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 FAM214BQ7L5A3 538 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 CPNE2Q96FN4 548 aaPredicted RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 OR10C1Q96KK4 312 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 NKX6-2Q9C056 277 aaPredicted RBP12.4□□□□□ -0.42
CHD3-211ENST00000481999 PLEKHJ1Q9NW61 149 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 OR5AC2Q9NZP5 309 aa12.4□□□□□ -0.42
CHD3-211ENST00000481999 DKK4Q9UBT3 224 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms