RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 F8VWA3 439 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 SH2D1BO14796 132 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 SPRY3O43610 288 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 KNG1P01042 644 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 IGHV1-46P01743 117 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 MT-ND4P03905 459 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 CD3DP04234 171 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 SPNP16150 400 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 GLRA1P23415 457 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 BTCP35070 178 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 MDH2P40926 338 aaKnown RBP10.85□□□□□ -0.67
VPS13D-205ENST00000473099 BTG1P62324 171 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 SRSF7Q16629 238 aaKnown RBP eCLIP10.85□□□□□ -0.67
VPS13D-205ENST00000473099 RNASE10Q5GAN6 216 aaKnown RBP10.85□□□□□ -0.67
VPS13D-205ENST00000473099 ATAD3CQ5T2N8 411 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 PRAMEF6Q5VXH4 476 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 SHEQ5VZ18 495 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 ZNF782Q6ZMW2 699 aaPredicted RBP10.85□□□□□ -0.67
VPS13D-205ENST00000473099 BTN2A1Q7KYR7 527 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 HOGA1Q86XE5 327 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 OR4C16Q8NGL9 310 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 OR11L1Q8NGX0 322 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 HPS1Q92902 700 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 SULT4A1Q9BR01 284 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 C12orf4Q9NQ89 552 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 NPDC1Q9NQX5 325 aaPredicted RBP10.85□□□□□ -0.67
VPS13D-205ENST00000473099 MCUBQ9NWR8 336 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 C1orf123Q9NWV4 160 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 TREM2Q9NZC2 230 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 AK3Q9UIJ7 227 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 SCP2D1Q9UJQ7 156 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 ELF5Q9UKW6 265 aaPredicted RBP10.85□□□□□ -0.67
VPS13D-205ENST00000473099 DOCK11Q5JSL3 2073 aa10.85□□□□□ -0.67
VPS13D-205ENST00000473099 DEFB108AA8MXU0 73 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 H7C1Q1 480 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 IFNL4K9M1U5 179 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 DEGS1O15121 323 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 SSX4O60224 188 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 DHFRP00374 187 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 TCRBP04435 133 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 AMY2BP19961 511 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 GIFP27352 417 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 RBMS2Q15434 407 aaKnown RBP10.84□□□□□ -0.67
VPS13D-205ENST00000473099 MPPED2Q15777 294 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 ZNF672Q499Z4 452 aaPredicted RBP10.84□□□□□ -0.67
VPS13D-205ENST00000473099 RSBN1Q5VWQ0 802 aaPredicted RBP10.84□□□□□ -0.67
VPS13D-205ENST00000473099 ACP7Q6ZNF0 438 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 BEST4Q8NFU0 473 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 Q8TCH9 128 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 LRRC29Q8WV35 223 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 ITLN1Q8WWA0 313 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 FBXW5Q969U6 566 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 PIK3IP1Q96FE7 263 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 ZNF488Q96MN9 340 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 PRRT1Q99946 306 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 SLC25A21Q9BQT8 299 aaPredicted RBP10.84□□□□□ -0.67
VPS13D-205ENST00000473099 FAAP24Q9BTP7 215 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 DYNLRB1Q9NP97 96 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 UFSP2Q9NUQ7 469 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 SLC2A8Q9NY64 477 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 CISD1Q9NZ45 108 aaKnown RBP10.84□□□□□ -0.67
VPS13D-205ENST00000473099 NPTNQ9Y639 398 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 HECTD1Q9ULT8 2610 aa10.84□□□□□ -0.67
VPS13D-205ENST00000473099 INMT-MINDY4F8WBC2 141 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 IFNA6P05013 189 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 IRF2P14316 349 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 ZNF44P15621 663 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 LOXP28300 417 aaPredicted RBP10.83□□□□□ -0.68
VPS13D-205ENST00000473099 KCNJ3P48549 501 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 BCAP31P51572 246 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 SNU13P55769 128 aaKnown RBP10.83□□□□□ -0.68
VPS13D-205ENST00000473099 SNRPD2P62316 118 aaKnown RBP10.83□□□□□ -0.68
VPS13D-205ENST00000473099 VAX1Q5SQQ9 334 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 Q6ZS49 121 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 ZNF826PQ6ZT77 177 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 TMEM17Q86X19 198 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 ARRDC1Q8N5I2 433 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 GVQW1Q8N7I0 195 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 OR5H2Q8NGV7 314 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 OR4K15Q8NH41 348 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 OR56B4Q8NH76 319 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 NEK7Q8TDX7 302 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 ZNF286AQ9HBT8 521 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 ZNF701Q9NV72 531 aaPredicted RBP10.83□□□□□ -0.68
VPS13D-205ENST00000473099 RNF7Q9UBF6 113 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 MGAT4AQ9UM21 535 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 COL12A1Q99715 3063 aa10.83□□□□□ -0.68
VPS13D-205ENST00000473099 hCG_2014768A0A024R1R8 64 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 TRBV6-6A0A0A6YYG2 114 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 UBE2QL1A1L167 161 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 FUOMA2VDF0 154 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 LRRC30A6NM36 301 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 SIAH2O43255 324 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 PRAF2O60831 178 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 NDUFB6O95139 128 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 HAND1O96004 215 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 AMY2AP04746 511 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 FCGR3AP08637 254 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 H2AFB2P0C5Z0 115 aa10.82□□□□□ -0.68
VPS13D-205ENST00000473099 LMO1P25800 156 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms