RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 ZBED9Q6R2W3 1325 aa2.34□□□□□ -2.04
PRPF40A-208ENST00000472760 NRCAMQ92823 1304 aa2.34□□□□□ -2.04
PRPF40A-208ENST00000472760 SSH2Q76I76 1423 aa2.34□□□□□ -2.04
PRPF40A-208ENST00000472760 IGKV1OR2-108A0A075B7D4 117 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 ISLRO14498 428 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 SOD3P08294 240 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 PRTN3P24158 256 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 RAB38P57729 211 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 VSNL1P62760 191 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 SLC9A3R2Q15599 337 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 ZNF141Q15928 474 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 SSX6Q7RTT6 188 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 RBM45Q8IUH3 476 aaKnown RBP2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 CPNE9Q8IYJ1 553 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 TWIST2Q8WVJ9 160 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 RAB1BQ9H0U4 201 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 RBM12B-AS1Q9P1G2 102 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 STK38LQ9Y2H1 464 aa2.33□□□□□ -2.04
PRPF40A-208ENST00000472760 C2orf16Q68DN1 1984 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 IGHV3-21A0A0B4J1V1 117 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 hCG_2039718K7EN88 272 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 SPOPO43791 374 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 IGHMP01871 453 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 TRGV3P03979 118 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 TPM1P09493 284 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 MEF2BQ02080 365 aaPredicted RBP2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 C18orf21Q32NC0 220 aaPredicted RBP2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 LGALSLQ3ZCW2 172 aaPredicted RBP2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 APOL4Q9BPW4 351 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 ULBP1Q9BZM6 244 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 SLC25A31Q9H0C2 315 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 TXNIPQ9H3M7 391 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 POMKQ9H5K3 350 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 XKR8Q9H6D3 395 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 HAUS4Q9H6D7 363 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 PLEKHA1Q9HB21 404 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 RHOFQ9HBH0 211 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 TMBIM4Q9HC24 238 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 CLEC2DQ9UHP7 191 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 CARHSP1Q9Y2V2 147 aaKnown RBP2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 NOS1P29475 1434 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 SEC16AO15027 2179 aa2.32□□□□□ -2.04
PRPF40A-208ENST00000472760 ZNF729A6NN14 1252 aaPredicted RBP2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 F5H5P2 479 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 FFAR1O14842 300 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 IVLP07476 585 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 CECR9P0C854 216 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 M6PRP20645 277 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 TTPAP49638 278 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 ZNF83P51522 516 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 RAB25P57735 213 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 HBMQ6B0K9 141 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 ZNF470Q6ECI4 717 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 GLYATQ6IB77 296 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 ERICH5Q6P6B1 374 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 TPGS1Q6ZTW0 290 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 DPPA2Q7Z7J5 298 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 COMTD1Q86VU5 262 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 ZFP82Q8N141 532 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 CCL17Q92583 94 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 IGF2BP2-AS1Q96M15 143 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 PKMYT1Q99640 499 aa2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 ZNF436Q9C0F3 470 aaPredicted RBP2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 MCTS1Q9ULC4 181 aaKnown RBP2.31□□□□□ -2.04
PRPF40A-208ENST00000472760 IGHV3-43A0A0B4J1X8 118 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 A0A1B0GW15 77 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 A0A1B0GXF2 115 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 PGPA6NDG6 321 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 SYNGR2O43760 224 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 PSIP1O75475 530 aaKnown RBP2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 MYO1DO94832 1006 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 CPSF4O95639 269 aaKnown RBP2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 IGHV3-53P01767 116 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 GTF2F2P13984 249 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 ELK4P28324 431 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 GCLMP48507 274 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 FOXA1P55317 472 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 TSPAN5P62079 268 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 TRIP13Q15645 432 aaPredicted RBP2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 TMEM215Q68D42 235 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 LRP11Q86VZ4 500 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 RPRMLQ8N4K4 120 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 C3orf22Q8N5N4 141 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 OR4K17Q8NGC6 315 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 ZMYND19Q96E35 227 aaPredicted RBP2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 ZNF75AQ96N20 296 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 LINC01587Q99440 93 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 PITX2Q99697 317 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 GABARAPL1Q9H0R8 117 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 ZNF586Q9NXT0 402 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 ADAMTSL3P82987 1691 aa2.3□□□□□ -2.04
PRPF40A-208ENST00000472760 SHANK1Q9Y566 2161 aa2.29□□□□□ -2.04
PRPF40A-208ENST00000472760 LOXHD1Q8IVV2 1947 aa2.29□□□□□ -2.04
PRPF40A-208ENST00000472760 A0A0B4J2C4 111 aa2.29□□□□□ -2.04
PRPF40A-208ENST00000472760 LOC100506127A0A0U1RQW1 187 aa2.29□□□□□ -2.04
PRPF40A-208ENST00000472760 MYBPHLA2RUH7 354 aa2.29□□□□□ -2.04
PRPF40A-208ENST00000472760 H3BP45 60 aa2.29□□□□□ -2.04
PRPF40A-208ENST00000472760 M0QXV9 152 aa2.29□□□□□ -2.04
PRPF40A-208ENST00000472760 AQP9O43315 295 aa2.29□□□□□ -2.04
PRPF40A-208ENST00000472760 IGKV1D-33P01593 117 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms