RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NFAM1Q8NET5 270 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-209ENST00000472056 TINAGL1Q9GZM7 467 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-209ENST00000472056 MED13LQ71F56 2210 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 PQLC2LA1A4F0 135 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 OPRK1P41145 380 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 LEMD1Q68G75 181 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 TMEM179BQ7Z7N9 219 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 SIRT6Q8N6T7 355 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 UBTD1Q9HAC8 227 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 SIRT5Q9NXA8 310 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 C7orf77A4D0Y5 90 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 ZBTB42B2RXF5 422 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 DIRC3C9JPN6 131 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 GUSBP08236 651 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 CCR5P51681 352 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 KTI12Q96EK9 354 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-209ENST00000472056 HSD17B10Q99714 261 aaKnown RBP11.89□□□□□ -0.51
COL6A3-209ENST00000472056 IGLV3-27P01718 113 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 FREM1Q5H8C1 2179 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 ZNF716A6NP11 495 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 WNT1P04628 370 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 PRRX1P54821 245 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 ZNF385BQ569K4 471 aa11.89□□□□□ -0.51
COL6A3-209ENST00000472056 FAM109BQ6ICB4 259 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-209ENST00000472056 OPN1LWP04000 364 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 PRSS1P07477 247 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 MOB3AQ96BX8 217 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 OR5AC2Q9NZP5 309 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 TRAV34A0A0B4J273 112 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 TRDCB7Z8K6 153 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 CEACAM3P40198 252 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 CLDN18P56856 261 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 PPIAP62937 165 aaKnown RBP11.88□□□□□ -0.51
COL6A3-209ENST00000472056 NTHL1P78549 312 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 FAM78BQ5VT40 261 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 IL22RA2Q969J5 263 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 MRPL37Q9BZE1 423 aaKnown RBP11.88□□□□□ -0.51
COL6A3-209ENST00000472056 TAF1LQ8IZX4 1826 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 CYB5R3P00387 301 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-209ENST00000472056 SEMG1P04279 462 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 DDTP30046 118 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 AVPR2P30518 371 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 CSNK1EP49674 416 aaKnown RBP11.88□□□□□ -0.51
COL6A3-209ENST00000472056 MMP16P51512 607 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 PLPPR5Q32ZL2 321 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 TMEM211Q6ICI0 200 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 PAQR6Q6TCH4 344 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 PARM1Q6UWI2 310 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 SHISA6Q6ZSJ9 500 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 ROS1P08922 2347 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 M0R296 226 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 CDC14BO60729 498 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 IGLV3-25P01717 112 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 SUCLG1P53597 346 aaKnown RBP11.88□□□□□ -0.51
COL6A3-209ENST00000472056 HYAL4Q2M3T9 481 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 D2HGDHQ8N465 521 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 ADAT3Q96EY9 351 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-209ENST00000472056 PIPOXQ9P0Z9 390 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 THADAQ6YHU6 1953 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 GOSR1O95249 250 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 FAAP20Q6NZ36 180 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 C16orf52Q8NHV5 167 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 RAB37Q96AX2 223 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 CACNG5Q9UF02 275 aa11.88□□□□□ -0.51
COL6A3-209ENST00000472056 C7orf66A4D0T2 115 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 GLULP15104 373 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 C21orf62-AS1Q17RA5 79 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 MRGPRX1Q96LB2 322 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 C1QTNF12Q5T7M4 302 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 ZNF383Q8NA42 475 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 CDX2Q99626 313 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-209ENST00000472056 GPR61Q9BZJ8 451 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 ELF5Q9UKW6 265 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-209ENST00000472056 EPPINO95925 133 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 HBZP02008 142 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 SLC37A1P57057 533 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 IZUMO4Q1ZYL8 232 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 UPK1AO00322 258 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 CRYBA1P05813 215 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 SLC35E4Q6ICL7 350 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 H3BQ15 152 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 CEBPDP49716 269 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-209ENST00000472056 PYCR3Q53H96 274 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 GPA33Q99795 319 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 IL36GQ9NZH8 169 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 THAP10Q9P2Z0 257 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-209ENST00000472056 STARD10Q9Y365 291 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 ZNF785A8K8V0 405 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 CD27P26842 260 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 METAP1P53582 386 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 TAS2R60P59551 318 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 NKAIN2Q5VXU1 208 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 RDH5Q92781 318 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 MRGPRX3Q96LB0 322 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 MMP25Q9NPA2 562 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 PLEKHB1Q9UF11 243 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-209ENST00000472056 BRCA1P38398 1863 aaKnown RBP11.87□□□□□ -0.51
COL6A3-209ENST00000472056 DSPPQ9NZW4 1301 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 MELTFP08582 738 aa11.87□□□□□ -0.51
COL6A3-209ENST00000472056 ZG16BQ96DA0 208 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms