RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 IL1F10Q8WWZ1 152 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF501Q96CX3 271 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 CMTM7Q96FZ5 175 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF486Q96H40 463 aaPredicted RBP3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 OR7D2Q96RA2 312 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 GPER1Q99527 375 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 HSPB9Q9BQS6 159 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 PDCD10Q9BUL8 212 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 RIOK2Q9BVS4 552 aaKnown RBP3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 EBPLQ9BY08 206 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 SLC17A9Q9BYT1 436 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 ADGRL4Q9HBW9 690 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 PLSCR3Q9NRY6 295 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 CISHQ9NSE2 258 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 HSPB8Q9UJY1 196 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 POU2F3Q9UKI9 436 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 NTNG1Q9Y2I2 539 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 FBXO7Q9Y3I1 522 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 KIF1BO60333 1816 aa3.88□□□□□ -1.79
CCDC88A-210ENST00000468534 CECR2Q9BXF3 1484 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 NISCHQ9Y2I1 1504 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 MEIKINA0A087WXM9 373 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 NKX2-6A6NCS4 301 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 FOXI3A8MTJ6 420 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 BTNL10A8MVZ5 291 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 G3V2L1 256 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 MRASO14807 208 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 IL3P08700 152 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 MRPL3P09001 348 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 OR5G3P0C626 314 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 GKN3PP0CG01 181 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 GNB3P16520 340 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 SHC1P29353 583 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 TSPOP30536 169 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 GLRXP35754 106 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 HNRNPA3P51991 378 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 LIM2P55344 173 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 RND3P61587 244 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 NCALDP61601 193 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 PKIAP61925 76 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 BAXQ07812 192 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 FASTKQ14296 549 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 IHHQ14623 411 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 FCN2Q15485 313 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 CDNFQ49AH0 187 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 TECRLQ5HYJ1 363 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 MS4A13Q5J8X5 152 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 ZFAND6Q6FIF0 208 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 Q6ZVH6 145 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 OAFQ86UD1 273 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 PRR22Q8IZ63 422 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF557Q8N988 423 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF383Q8NA42 475 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 SLC30A7Q8NEW0 376 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 OR5H6Q8NGV6 325 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 ZFAND1Q8TCF1 268 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 AGAP11Q8TF27 550 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 CANT1Q8WVQ1 401 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 TCTEX1D2Q8WW35 142 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 PIK3IP1Q96FE7 263 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 DCUN1D1Q96GG9 259 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 LINC00477Q96M19 166 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 KCTD14Q9BQ13 255 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 TMEM126AQ9H061 195 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 RAB22AQ9UL26 194 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF780BQ9Y6R6 833 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 GREB1LQ9C091 1923 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 PIK3C2GO75747 1445 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 CEP162Q5TB80 1403 aa3.87□□□□□ -1.79
CCDC88A-210ENST00000468534 UHRF1BP1LA0JNW5 1464 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 SPEF2Q9C093 1822 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 BORCS7-ASMTA0A0B4J1R7 106 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 LOC101059948A0A1B0GTJ6 334 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 SNURFLB1AK76 121 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 E7EQ34 232 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 H3BSA7 217 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 GYG2O15488 501 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 WDR1O75083 606 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 REG1AP05451 166 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 UBBP0CG47 229 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM106CPP0CH98 169 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 CD79AP11912 226 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF708P17019 499 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 IL1RNP18510 177 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 MDH2P40926 338 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 SOX3P41225 446 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 RPS28P62857 69 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 MRPS10P82664 201 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF154Q13106 437 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 TMEM187Q14656 261 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 LTC4SQ16873 150 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 FAM106AQ4KMX7 169 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 OCIAD2Q56VL3 154 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 NANOGP8Q6NSW7 305 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 AGTRAPQ6RW13 159 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 ALKAL1Q6UXT8 129 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 APOOLQ6UXV4 268 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 STRADAQ7RTN6 431 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 NEGR1Q7Z3B1 354 aa3.86□□□□□ -1.79
CCDC88A-210ENST00000468534 CEACAM19Q7Z692 300 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms