RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 TMPRSS13Q9BYE2 586 aa16.4■□□□□ 0.22
COL9A3-204ENST00000463487 CST11Q9H112 138 aa16.4■□□□□ 0.22
COL9A3-204ENST00000463487 PPIL3Q9H2H8 161 aaKnown RBP16.4■□□□□ 0.22
COL9A3-204ENST00000463487 PLGRKTQ9HBL7 147 aa16.4■□□□□ 0.22
COL9A3-204ENST00000463487 IL36RNQ9UBH0 155 aa16.4■□□□□ 0.22
COL9A3-204ENST00000463487 TRAV1-2A0A0B4J238 106 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 FUOMA2VDF0 154 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 H3BUI4 141 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 DEGS1O15121 323 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 PPIAL4GP0DN37 164 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 CD36P16671 472 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 SRD5A1P18405 259 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 ADRA2CP18825 462 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 HTR2CP28335 458 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 FGF9P31371 208 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-204ENST00000463487 SCN1BQ07699 218 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 NHLRC3Q5JS37 347 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 METTL11BQ5VVY1 283 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 C22orf42Q6IC83 251 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 OR4D6Q8NGJ1 314 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 C8orf46Q8TAG6 207 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 NANPQ8TBE9 248 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 NKX3-1Q99801 234 aaPredicted RBP16.39■□□□□ 0.21
COL9A3-204ENST00000463487 ST3GAL6Q9Y274 331 aa16.39■□□□□ 0.21
COL9A3-204ENST00000463487 MTORP42345 2549 aa16.38■□□□□ 0.21
COL9A3-204ENST00000463487 OR2H2O95918 312 aa16.38■□□□□ 0.21
COL9A3-204ENST00000463487 RBM11P57052 281 aaKnown RBP16.38■□□□□ 0.21
COL9A3-204ENST00000463487 RPL31P62899 125 aaKnown RBP16.38■□□□□ 0.21
COL9A3-204ENST00000463487 PAX8Q06710 450 aa16.38■□□□□ 0.21
COL9A3-204ENST00000463487 BLMHQ13867 455 aa16.38■□□□□ 0.21
COL9A3-204ENST00000463487 GRK1Q15835 563 aa16.38■□□□□ 0.21
COL9A3-204ENST00000463487 DACT3Q96B18 629 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-204ENST00000463487 METRNQ9UJH8 293 aa16.38■□□□□ 0.21
COL9A3-204ENST00000463487 KPTNQ9Y664 436 aa16.38■□□□□ 0.21
COL9A3-204ENST00000463487 WNK2Q9Y3S1 2297 aa16.38■□□□□ 0.21
COL9A3-204ENST00000463487 hCG_1809904A0A1W2PP81 198 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 A0A1W2PPE2 198 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 A0A1W2PR64 198 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 A0A1W2PRV1 198 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 TRIM64CA6NLI5 447 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 SIRPB1O00241 398 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 MGST3O14880 152 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 ZNF737O75373 536 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 JUNBP17275 347 aaPredicted RBP16.37■□□□□ 0.21
COL9A3-204ENST00000463487 LMO1P25800 156 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 EDDM3BP56851 147 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 MPV17LQ2QL34 196 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 C1orf100Q5SVJ3 147 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 LYPD6Q86Y78 171 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 FAM185AQ8N0U4 392 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 KIR3DL3Q8N743 410 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 LY6G5BQ8NDX9 201 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 MRPS26Q9BYN8 205 aaKnown RBP16.37■□□□□ 0.21
COL9A3-204ENST00000463487 TXNL4BQ9NX01 149 aaKnown RBP16.37■□□□□ 0.21
COL9A3-204ENST00000463487 ONECUT1Q9UBC0 465 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 AK6Q9Y3D8 172 aaKnown RBP16.37■□□□□ 0.21
COL9A3-204ENST00000463487 V9GY05 133 aa16.37■□□□□ 0.21
COL9A3-204ENST00000463487 SLC17A2O00624 439 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 FCN3O75636 299 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 CRTAPO75718 401 aaPredicted RBP16.36■□□□□ 0.21
COL9A3-204ENST00000463487 TOX4O94842 621 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 FAM157CP0CG43 387 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 RAB3BP20337 219 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 RAB11BQ15907 218 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 PIGYQ3MUY2 71 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 FGFRL1Q8N441 504 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 KCTD7Q96MP8 289 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 CHCHD6Q9BRQ6 235 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 SPACA1Q9HBV2 294 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 ARHGAP32A7KAX9 2087 aa16.36■□□□□ 0.21
COL9A3-204ENST00000463487 LOC100506127A0A0U1RQW1 187 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 SLC22A1O15245 554 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 OR7C1O76099 320 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-204ENST00000463487 BPNT1O95861 308 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 MEF2CQ06413 473 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-204ENST00000463487 EDDM3AQ14507 147 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 GDPGP1Q6ZNW5 385 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 IL17RELQ6ZVW7 336 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 TPRA1Q86W33 373 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 KCNG3Q8TAE7 436 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 WDFY2Q96P53 400 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 CHST6Q9GZX3 395 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 OR51E2Q9H255 320 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 IFT22Q9H7X7 185 aa16.35■□□□□ 0.21
COL9A3-204ENST00000463487 SONP18583 2426 aaKnown RBP16.35■□□□□ 0.21
COL9A3-204ENST00000463487 A0A0G2JK05 382 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 hADV38S2A0JD32 116 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 TMEM82A0PJX8 343 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A10PA6NDY2 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A18PA6NE21 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A16PA6NEW6 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A20PA6NIJ5 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A8PA6NJQ4 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A7PA6NKC0 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A22PA8MWA6 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A12PA8MX19 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A5PA8MXJ8 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A23PA8MXZ1 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 M0R1W7 72 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 SLC33A1O00400 549 aaPredicted RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms