RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 RSU1Q15404 277 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 CEACAM19Q7Z692 300 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 SPARTQ8N0X7 666 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 OR8H2Q8N162 312 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 OR51T1Q8NGJ9 327 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 TBC1D15Q8TC07 691 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 TMEM203Q969S6 136 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 EXOSC4Q9NPD3 245 aaKnown RBP16.4■□□□□ 0.22
COL9A3-202ENST00000452372 C19orf12Q9NSK7 152 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 IL36GQ9NZH8 169 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 ZNF69Q9UC07 566 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 ING4Q9UNL4 249 aa16.4■□□□□ 0.22
COL9A3-202ENST00000452372 SF3B6Q9Y3B4 125 aaKnown RBP16.4■□□□□ 0.22
COL9A3-202ENST00000452372 DSCAML1Q8TD84 2053 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 IGHV3OR16-10A0A075B7F0 116 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 TRAV40A0A0B4J280 105 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 MEGF11A6BM72 1044 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 M0R1W7 72 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 PSPNO60542 156 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 CDRT1O95170 752 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 OR2H2O95918 312 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 PSMA1P25786 263 aaKnown RBP16.39■□□□□ 0.21
COL9A3-202ENST00000452372 BPIFB3P59826 476 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 TUSC1Q2TAM9 212 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 FAM27D1Q5T7N8 215 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 GPR157Q5UAW9 335 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 Q6P435 159 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 TMEM91Q6ZNR0 172 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 LYPD6Q86Y78 171 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 FAM185AQ8N0U4 392 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 Q8N7P7 452 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 OR4M1Q8NGD0 313 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 C22orf15Q8WYQ4 148 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 PHYHIPQ92561 330 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 S100A13Q99584 98 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 METTL9Q9H1A3 318 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 TCF7L1Q9HCS4 588 aa16.39■□□□□ 0.21
COL9A3-202ENST00000452372 CENPVL3A0A0U1RRI6 287 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 SIRPB1O00241 398 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 HTR3BO95264 441 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 UCHL1P09936 223 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 SRMP19623 302 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 GABRR1P24046 479 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 RPS25P62851 125 aaKnown RBP16.38■□□□□ 0.21
COL9A3-202ENST00000452372 HSD17B12Q53GQ0 312 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 TMEM200BQ69YZ2 307 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 C9orf139Q6ZV77 190 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 USP43Q70EL4 1123 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 GDPD3Q7L5L3 318 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 VMO1Q7Z5L0 202 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 BPIFB2Q8N4F0 458 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 JAGN1Q8N5M9 183 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 NKAIN3Q8N8D7 197 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 OR10K1Q8NGX5 313 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 PPP1R35Q8TAP8 253 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 ZNF418Q8TF45 676 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-202ENST00000452372 SLC6A7Q99884 636 aa16.38■□□□□ 0.21
COL9A3-202ENST00000452372 MS4A7Q9GZW8 240 aaPredicted RBP16.38■□□□□ 0.21
COL9A3-202ENST00000452372 PPIL3Q9H2H8 161 aaKnown RBP16.38■□□□□ 0.21
COL9A3-202ENST00000452372 A0A1W2PPH5 198 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 DEGS1O15121 323 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 ZNF780AO75290 641 aaPredicted RBP16.37■□□□□ 0.21
COL9A3-202ENST00000452372 GABRA5P31644 462 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 BLMHQ13867 455 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 GRK1Q15835 563 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 UBE2UQ5VVX9 321 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 BCL6BQ8N143 479 aaPredicted RBP16.37■□□□□ 0.21
COL9A3-202ENST00000452372 CHST4Q8NCG5 386 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 OR4S1Q8NGB4 309 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 ZFAND2BQ8WV99 257 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 MUL1Q969V5 352 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 NR1H4Q96RI1 486 aaPredicted RBP16.37■□□□□ 0.21
COL9A3-202ENST00000452372 SUCNR1Q9BXA5 334 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 UNKLQ9H9P5 680 aaKnown RBP16.37■□□□□ 0.21
COL9A3-202ENST00000452372 PCDHB16Q9NRJ7 776 aa16.37■□□□□ 0.21
COL9A3-202ENST00000452372 A0A0G2JK05 382 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 MGST3O14880 152 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 RGS9O75916 674 aaPredicted RBP16.36■□□□□ 0.21
COL9A3-202ENST00000452372 CSTBP04080 98 aaKnown RBP16.36■□□□□ 0.21
COL9A3-202ENST00000452372 ZNF44P15621 663 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 OR3A1P47881 315 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 EDDM3BP56851 147 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 SCN1BQ07699 218 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 GPR176Q14439 515 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 IL13RA2Q14627 380 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 SSX1Q16384 188 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 ZNF773Q6PK81 442 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 METAP1DQ6UB28 335 aaPredicted RBP16.36■□□□□ 0.21
COL9A3-202ENST00000452372 LRRTM1Q86UE6 522 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 OSR2Q8N2R0 312 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 LHX4Q969G2 390 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 UQCC2Q9BRT2 126 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 CHST6Q9GZX3 395 aa16.36■□□□□ 0.21
COL9A3-202ENST00000452372 METTL8Q9H825 291 aaKnown RBP16.36■□□□□ 0.21
COL9A3-202ENST00000452372 MRPS28Q9Y2Q9 187 aaKnown RBP16.36■□□□□ 0.21
COL9A3-202ENST00000452372 HAX1O00165 279 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 SLC33A1O00400 549 aaPredicted RBP16.35■□□□□ 0.21
COL9A3-202ENST00000452372 CD37P11049 281 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 PRTN3P24158 256 aa16.35■□□□□ 0.21
COL9A3-202ENST00000452372 ERP29P30040 261 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms