RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 TMEM95Q3KNT9 176 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 TMEM244Q5VVB8 128 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 HEPN1Q6WQI6 88 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 FAM220AQ7Z4H9 259 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 ZDHHC13Q8IUH4 622 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 OR10H4Q8NGA5 316 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 OR51D1Q8NGF3 324 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 OR4P4Q8NGL7 312 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 CORO2AQ92828 525 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 RFKQ969G6 155 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 TBX5Q99593 518 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 SLC25A33Q9BSK2 321 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 RHOFQ9HBH0 211 aa10.63□□□□□ -0.71
HMGB3-204ENST00000448905 EXOSC4Q9NPD3 245 aaKnown RBP10.63□□□□□ -0.71
HMGB3-204ENST00000448905 IGKV1-27A0A075B6S5 117 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 TCRBV3S1A0A5B6 114 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 ZAR1LA6NP61 321 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 OOSP1A8MZH6 123 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 H3BSH0 61 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 PSPNO60542 156 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 ZNF20P17024 532 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 JUNBP17275 347 aaPredicted RBP10.62□□□□□ -0.71
HMGB3-204ENST00000448905 CD24P25063 80 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 HTR1FP30939 366 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 NPBWR2P48146 333 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 POU3F4P49335 361 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 ZNF91Q05481 1191 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 SCN1BQ07699 218 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 PDZK1IP1Q13113 114 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 TMED1Q13445 227 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 C9orf152Q5JTZ5 239 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 UNQ9370/PRO34162Q6UXP9 181 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 LHFPL2Q6ZUX7 228 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 KCTD20Q7Z5Y7 419 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 ZNF565Q8N9K5 539 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 SPSB1Q96BD6 273 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 MCRIP2Q9BUT9 160 aaKnown RBP10.62□□□□□ -0.71
HMGB3-204ENST00000448905 HMG20AQ9NP66 347 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 PCDHB16Q9NRJ7 776 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 RBFOX1Q9NWB1 397 aaKnown RBP10.62□□□□□ -0.71
HMGB3-204ENST00000448905 GSTK1Q9Y2Q3 226 aa10.62□□□□□ -0.71
HMGB3-204ENST00000448905 BUB1B-PAK6H3BSN5 160 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 K7EIL1 84 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 SIRPB1O00241 398 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 ENTPD6O75354 484 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 ATF1P18846 271 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 BCL3P20749 454 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 SNU13P55769 128 aaKnown RBP10.61□□□□□ -0.71
HMGB3-204ENST00000448905 CD69Q07108 199 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 TCTEX1D4Q5JR98 221 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 C12orf73Q69YU5 71 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 UTS2BQ765I0 119 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 TCF23Q7RTU1 214 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 OSR2Q8N2R0 312 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 CHST4Q8NCG5 386 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 UTP4Q969X6 686 aaKnown RBP10.61□□□□□ -0.71
HMGB3-204ENST00000448905 FGGYQ96C11 551 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 MYCBPQ99417 103 aaPredicted RBP10.61□□□□□ -0.71
HMGB3-204ENST00000448905 GNG8Q9UK08 70 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 POMPQ9Y244 141 aa10.61□□□□□ -0.71
HMGB3-204ENST00000448905 LOC107986453A0A1B0GWG9 222 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 PSMB11A5LHX3 300 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 DEGS1O15121 323 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 MMP23AO75900 390 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 OR2H2O95918 312 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 IGLV1-47P01700 117 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 CALCBP10092 127 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 ZNF44P15621 663 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 LMO1P25800 156 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 SLC6A1P30531 599 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 PTGFRP43088 359 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 OR3A1P47881 315 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 AESQ08117 197 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 RBM39Q14498 530 aaKnown RBP10.6□□□□□ -0.71
HMGB3-204ENST00000448905 TPTE2P1Q5T6R2 138 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 PRAMEF5Q5TYX0 476 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 SSX6Q7RTT6 188 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 THNSL2Q86YJ6 484 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 RDH10Q8IZV5 341 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 OR8J1Q8NGP2 316 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 BCAS4Q8TDM0 211 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 HRASLS5Q96KN8 279 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 INPP5EQ9NRR6 644 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 ZFP57Q9NU63 452 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 OR6C3Q9NZP0 311 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 HHLA2Q9UM44 414 aa10.6□□□□□ -0.71
HMGB3-204ENST00000448905 M0R129 80 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 MITFO75030 526 aaPredicted RBP10.59□□□□□ -0.71
HMGB3-204ENST00000448905 ISG15P05161 165 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 RPSAP08865 295 aaKnown RBP10.59□□□□□ -0.71
HMGB3-204ENST00000448905 FASP25445 335 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 CD34P28906 385 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 C21orf33P30042 268 aaPredicted RBP10.59□□□□□ -0.71
HMGB3-204ENST00000448905 OR3A4PP47883 348 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 GLIPR1P48060 266 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 SLC35B1P78383 322 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 BNIP1Q12981 228 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 HLA-DRB5Q30154 266 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 KRBOX4Q5JUW0 171 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 KDM4DQ6B0I6 523 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms