RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 RCC2Q9P258 522 aaKnown RBP17.35■□□□□ 0.37
CHD3-204ENST00000439235 HSF4Q9ULV5 492 aa17.35■□□□□ 0.37
CHD3-204ENST00000439235 V9GYH0 126 aa17.35■□□□□ 0.37
CHD3-204ENST00000439235 DSCAMO60469 2012 aa17.35■□□□□ 0.37
CHD3-204ENST00000439235 NKX6-3A6NJ46 265 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 ZNF205O95201 554 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 OR2H2O95918 312 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 CSF3P09919 207 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 HIST1H1DP16402 221 aaKnown RBP17.34■□□□□ 0.37
CHD3-204ENST00000439235 CHATP28329 748 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 PRDX2P32119 198 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 TMEM33P57088 247 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 PDCD1Q15116 288 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 CARTPTQ16568 116 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 SIGIRRQ6IA17 410 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 Q6P435 159 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 MUC20Q8N307 709 aaPredicted RBP17.34■□□□□ 0.37
CHD3-204ENST00000439235 DEFB108BQ8NET1 73 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 DNTTIP1Q9H147 329 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 PLEKHJ1Q9NW61 149 aa17.34■□□□□ 0.37
CHD3-204ENST00000439235 BEX4Q9NWD9 120 aaPredicted RBP17.34■□□□□ 0.37
CHD3-204ENST00000439235 MRPS7Q9Y2R9 242 aaKnown RBP17.34■□□□□ 0.37
CHD3-204ENST00000439235 CACNA1DQ01668 2161 aa17.33■□□□□ 0.37
CHD3-204ENST00000439235 HRNRQ86YZ3 2850 aaPredicted RBP17.33■□□□□ 0.36
CHD3-204ENST00000439235 IGKV1D-17A0A075B6S4 117 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 SIRPB1O00241 398 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 PPIHO43447 177 aaKnown RBP17.33■□□□□ 0.36
CHD3-204ENST00000439235 NDUFA2O43678 99 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 SSX4O60224 188 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 GLAP06280 429 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 GSTP1P09211 210 aaKnown RBP17.33■□□□□ 0.36
CHD3-204ENST00000439235 MDH2P40926 338 aaKnown RBP17.33■□□□□ 0.36
CHD3-204ENST00000439235 GABRA2P47869 451 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 CEBPDP49716 269 aaPredicted RBP17.33■□□□□ 0.36
CHD3-204ENST00000439235 PDLIM4P50479 330 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 MADCAM1Q13477 382 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 ZNF846Q147U1 533 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 ZMYND11Q15326 602 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 PLAC9Q5JTB6 97 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 MFSD4AQ8N468 514 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 OR5T2Q8NGG2 359 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 ANGPTL6Q8NI99 470 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 ARHGAP5-AS1Q96IT6 56 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 SOSTQ9BQB4 213 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 PECRQ9BY49 303 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.33■□□□□ 0.36
CHD3-204ENST00000439235 ZNF222Q9UK12 451 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 DYSFO75923 2080 aa17.33■□□□□ 0.36
CHD3-204ENST00000439235 CHD3Q12873 2000 aaKnown RBP17.33■□□□□ 0.36
CHD3-204ENST00000439235 A0A0G2JMP0 313 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 A0A0X1KG70 313 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 ISPDA4D126 451 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 SERPINE3A8MV23 424 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 MCRIP1C9JLW8 97 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 MFNGO00587 321 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 IGHV2-70P01814 119 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 GYPAP02724 150 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 LMO1P25800 156 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 GPR6P46095 362 aaPredicted RBP17.32■□□□□ 0.36
CHD3-204ENST00000439235 TMEM50BP56557 158 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 RBM39Q14498 530 aaKnown RBP17.32■□□□□ 0.36
CHD3-204ENST00000439235 ZNF260Q3ZCT1 412 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 CDNFQ49AH0 187 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 PAN3Q58A45 887 aaKnown RBP17.32■□□□□ 0.36
CHD3-204ENST00000439235 C6orf201Q7Z4U5 140 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 CD177Q8N6Q3 437 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 OR4M2Q8NGB6 313 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 PPP1R35Q8TAP8 253 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 NINJ1Q92982 152 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 PERPQ96FX8 193 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 ZNF665Q9H7R5 613 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 AUNIPQ9H7T9 357 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 ZNF581Q9P0T4 197 aa17.32■□□□□ 0.36
CHD3-204ENST00000439235 TRAV24A0A0B4J272 114 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 SLC33A1O00400 549 aaPredicted RBP17.31■□□□□ 0.36
CHD3-204ENST00000439235 GNB3P16520 340 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 MRPS10P82664 201 aaKnown RBP17.31■□□□□ 0.36
CHD3-204ENST00000439235 COL10A1Q03692 680 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 PNLIPRP3Q17RR3 467 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 ATPAF1Q5TC12 328 aaPredicted RBP17.31■□□□□ 0.36
CHD3-204ENST00000439235 SNX29P2Q8IUI4 249 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 ZNF561Q8N587 486 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 ZNF525Q8N782 197 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 SUMF2Q8NBJ7 301 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 NEK7Q8TDX7 302 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 SDSLQ96GA7 329 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 DPCDQ9BVM2 203 aaPredicted RBP17.31■□□□□ 0.36
CHD3-204ENST00000439235 ZMAT3Q9HA38 289 aaKnown RBP17.31■□□□□ 0.36
CHD3-204ENST00000439235 TMEM165Q9HC07 324 aa17.31■□□□□ 0.36
CHD3-204ENST00000439235 CA11O75493 328 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 HLA-DQB1P01920 261 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 INHBBP09529 407 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 KCNJ3P48549 501 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 GNG2P59768 71 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 DEFB113Q30KQ7 82 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 TMEM155Q4W5P6 130 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 PYDC2Q56P42 97 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 AVPI1Q5T686 147 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 SHEQ5VZ18 495 aa17.3■□□□□ 0.36
CHD3-204ENST00000439235 CLEC2AQ6UVW9 174 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms