RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 MESP2Q0VG99 397 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 LPAR2Q9HBW0 351 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 GNG4P50150 75 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 TRAT1Q6PIZ9 186 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 ZNF66Q6ZN08 573 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 ZNF788Q6ZQV5 615 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 SMRP1Q8NCR6 262 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 COA4Q9NYJ1 87 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 NAT8BQ9UHF3 227 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 MPC1Q9Y5U8 109 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 PEBP1P30086 187 aaKnown RBP15.14■□□□□ 0.01
PTPRF-209ENST00000438120 GALR1P47211 349 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 DMKNQ6E0U4 476 aaPredicted RBP15.14■□□□□ 0.01
PTPRF-209ENST00000438120 ETFRF1Q6IPR1 90 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 OR10G4Q8NGN3 311 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 OR10G9Q8NGN4 311 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 OR10G7Q8NGN6 311 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 WDR61Q9GZS3 305 aaKnown RBP15.14■□□□□ 0.01
PTPRF-209ENST00000438120 FBXL17Q9UF56 701 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 HAND1O96004 215 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 SEZ6L2Q6UXD5 910 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 PIK3IP1Q96FE7 263 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 MSL2Q9HCI7 577 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 OR6C3Q9NZP0 311 aa15.14■□□□□ 0.01
PTPRF-209ENST00000438120 ACTL6AO96019 429 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 PNPP00491 289 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 GABRA1P14867 456 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 C9orf40Q8IXQ3 194 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 NTNG2Q96CW9 530 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 AMTP48728 403 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 SAP30LQ9HAJ7 183 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 ANKRD20A5PA0PJZ0 165 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 KIAA1324LA8MWY0 1029 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-209ENST00000438120 GALP22466 123 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 CDC34P49427 236 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-209ENST00000438120 SIGLEC14Q08ET2 396 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 WDFY2Q96P53 400 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 TRAV38-1A0A0B4J264 116 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 LANCL1O43813 399 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 PTP4A1Q93096 173 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 AMMECR1Q9Y4X0 333 aaPredicted RBP15.13■□□□□ 0.01
PTPRF-209ENST00000438120 A0A1W2PQD3 144 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 DYNLT3P51808 116 aa15.13■□□□□ 0.01
PTPRF-209ENST00000438120 VAMP3Q15836 100 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 PIGYQ3MUY2 71 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 DUSP18Q8NEJ0 188 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 NEIL1Q96FI4 390 aaPredicted RBP15.12■□□□□ 0.01
PTPRF-209ENST00000438120 SLC45A2Q9UMX9 530 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 RAB5AP20339 215 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 TPPP2P59282 170 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 LIAT1Q6ZQX7 453 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 R3HDM4Q96D70 268 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 MAP6Q96JE9 813 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 OR2H1Q9GZK4 316 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 MMP26Q9NRE1 261 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 FKBP11Q9NYL4 201 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 AMDHD2Q9Y303 409 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 A0A1W2PQF6 199 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 HTN1P15515 57 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 MGAT2Q10469 447 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 TIPARPQ7Z3E1 657 aaKnown RBP15.12■□□□□ 0.01
PTPRF-209ENST00000438120 GPR35Q9HC97 309 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 SLC52A3Q9NQ40 469 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 SMCHD1A6NHR9 2005 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 SP1P08047 785 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 CEACAM3P40198 252 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 PMELP40967 661 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 KIR2DS2P43631 304 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 PRSS42Q7Z5A4 293 aa15.12■□□□□ 0.01
PTPRF-209ENST00000438120 STRCQ7RTU9 1775 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 CENPVL1A0A0U1RR11 272 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 TRDCB7Z8K6 153 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 PRSS44E7EML9 344 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 HOXC8P31273 242 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 FAM162BQ5T6X4 162 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 NHLRC2Q8NBF2 726 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 STARD10Q9Y365 291 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 TGOLN2O43493 480 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 MOSPD3O75425 235 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 BMI1P35226 326 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 OR8B3Q8NGG8 313 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 OR8B2Q96RD0 313 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 C12orf57Q99622 126 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 NEURL2Q9BR09 285 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 ANXA10Q9UJ72 324 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 COL18A1P39060 1754 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 RREB1Q92766 1687 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 PAPPAQ13219 1627 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 CD200P41217 278 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 CAMPP49913 170 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 TMEM33P57088 247 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 HIST1H3AP68431 136 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 TMEM241Q24JQ0 296 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 GAPTQ8N292 157 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 YTHDF2Q9Y5A9 579 aaKnown RBP15.11■□□□□ 0.01
PTPRF-209ENST00000438120 C1QCP02747 245 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 S100A8P05109 93 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 SPICQ8N5J4 248 aa15.11■□□□□ 0.01
PTPRF-209ENST00000438120 SF3B5Q9BWJ5 86 aaKnown RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms