RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 F8VWA3 439 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A15PP0C7V4 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A13PP0C7W8 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A14PP0C7W9 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM90A24PP0C7X0 464 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 RPS2P15880 293 aaKnown RBP12.76□□□□□ -0.37
USP4-203ENST00000415188 ZNF708P17019 499 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 GABRR1P24046 479 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 CHATP28329 748 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 MEOX1P50221 254 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 LUMP51884 338 aaPredicted RBP12.76□□□□□ -0.37
USP4-203ENST00000415188 CLDN18P56856 261 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 FAM209AQ5JX71 171 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 NKAPLQ5M9Q1 402 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 PRSS54Q6PEW0 395 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.76□□□□□ -0.37
USP4-203ENST00000415188 C6orf201Q7Z4U5 140 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 ZNF808Q8N4W9 903 aaPredicted RBP12.76□□□□□ -0.37
USP4-203ENST00000415188 BVESQ8NE79 360 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 ABHD3Q8WU67 409 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 ZNF845Q96IR2 970 aaPredicted RBP12.76□□□□□ -0.37
USP4-203ENST00000415188 NARFLQ9H6Q4 476 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 NECAP2Q9NVZ3 263 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 C1orf123Q9NWV4 160 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 DNAJB11Q9UBS4 358 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 GLS2Q9UI32 602 aa12.76□□□□□ -0.37
USP4-203ENST00000415188 MCTS1Q9ULC4 181 aaKnown RBP12.76□□□□□ -0.37
USP4-203ENST00000415188 CSMD1Q96PZ7 3565 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 PCNX1Q96RV3 2341 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 LRBAP50851 2863 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 IGKV1-27A0A075B6S5 117 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 ZNF587BE7ETH6 402 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 TPD52L2O43399 206 aaKnown RBP12.75□□□□□ -0.37
USP4-203ENST00000415188 IFNA2P01563 188 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 RBMXP38159 391 aaKnown RBP12.75□□□□□ -0.37
USP4-203ENST00000415188 ZNF92Q03936 586 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 PDZK1IP1Q13113 114 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 CDSNQ15517 529 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 SLC9A3R2Q15599 337 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 PABPC1L2AQ5JQF8 200 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 TSPO2Q5TGU0 170 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 DPPA2Q7Z7J5 298 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 CCDC36Q8IYA8 594 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 OSR2Q8N2R0 312 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 DCUN1D4Q92564 292 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 CMSS1Q9BQ75 279 aaKnown RBP12.75□□□□□ -0.37
USP4-203ENST00000415188 OPA3Q9H6K4 179 aa12.75□□□□□ -0.37
USP4-203ENST00000415188 KLF13Q9Y2Y9 288 aaPredicted RBP12.75□□□□□ -0.37
USP4-203ENST00000415188 KLF2Q9Y5W3 355 aaPredicted RBP12.75□□□□□ -0.37
USP4-203ENST00000415188 F5H0A9 414 aaPredicted RBP12.74□□□□□ -0.37
USP4-203ENST00000415188 SDCBPO00560 298 aaPredicted RBP12.74□□□□□ -0.37
USP4-203ENST00000415188 TPT1P13693 172 aaKnown RBP12.74□□□□□ -0.37
USP4-203ENST00000415188 SNTB1Q13884 538 aaKnown RBP12.74□□□□□ -0.37
USP4-203ENST00000415188 ATXN7L3Q14CW9 347 aaPredicted RBP12.74□□□□□ -0.37
USP4-203ENST00000415188 RNPS1Q15287 305 aaKnown RBP12.74□□□□□ -0.37
USP4-203ENST00000415188 ANKRD55Q3KP44 614 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 PAN3Q58A45 887 aaKnown RBP12.74□□□□□ -0.37
USP4-203ENST00000415188 PLCXD3Q63HM9 321 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 SGPP2Q8IWX5 399 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 SAXO1Q8IYX7 474 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 POC1AQ8NBT0 407 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 Q8NFD4 153 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 PIK3IP1Q96FE7 263 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 AQP10Q96PS8 301 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 RNF126Q9BV68 326 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 TTTY12Q9BZ98 90 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 AK3Q9UIJ7 227 aa12.74□□□□□ -0.37
USP4-203ENST00000415188 ZSCAN5BA6NJL1 495 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 POM121CA8CG34 1229 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 SPRY1O43609 319 aaPredicted RBP12.73□□□□□ -0.37
USP4-203ENST00000415188 ANGPTL7O43827 346 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 PDCD6O75340 191 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 FCGR3AP08637 254 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 PATE4P0C8F1 98 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 GLRA1P23415 457 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 EIF5AP63241 154 aaKnown RBP12.73□□□□□ -0.37
USP4-203ENST00000415188 ARF1P84077 181 aaKnown RBP12.73□□□□□ -0.37
USP4-203ENST00000415188 IL15RAQ13261 267 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 TAF9Q16594 264 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 DHRS11Q6UWP2 260 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 SLC30A7Q8NEW0 376 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 FGFBP3Q8TAT2 258 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 ZNF2Q9BSG1 426 aaPredicted RBP12.73□□□□□ -0.37
USP4-203ENST00000415188 SHARPINQ9H0F6 387 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 WDR13Q9H1Z4 485 aa12.73□□□□□ -0.37
USP4-203ENST00000415188 METTL8Q9H825 291 aaKnown RBP12.73□□□□□ -0.37
USP4-203ENST00000415188 CRYM-AS1A6NIL9 109 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 ACTL6AO96019 429 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 OR5H8P0DN80 308 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 PTGER4P35408 488 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 ARR3P36575 388 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 MALLQ13021 153 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 DMRTC1Q5HYR2 192 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 TMEM211Q6ICI0 200 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 DOLPP1Q86YN1 238 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 MCEMP1Q8IX19 187 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 STPG2Q8N412 459 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 MAFIPQ8WZ33 124 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 APOBEC3DQ96AK3 386 aaPredicted RBP12.72□□□□□ -0.37
USP4-203ENST00000415188 LINC00052Q96N35 136 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms