RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SLC5A7Q9GZV3 580 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 EIF5A2Q9GZV4 153 aaKnown RBP11.56□□□□□ -0.56
VPS54-203ENST00000409558 SLC2A9Q9NRM0 540 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 NECAP2Q9NVZ3 263 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 AMDHD2Q9Y303 409 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 SMG1Q96Q15 3661 aaKnown RBP11.56□□□□□ -0.56
VPS54-203ENST00000409558 ERVS71-1P61550 626 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 Q6ZRG5 221 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 ZNF565Q8N9K5 539 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 TTTY12Q9BZ98 90 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 EXPH5Q8NEV8 1989 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 MED12LQ86YW9 2145 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 CDK2AP1O14519 115 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 HSPA12AO43301 675 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 LYZL6O75951 148 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 GRPP07492 148 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 CFPP27918 469 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 SPEM2Q0P670 501 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 RNF138Q8WVD3 245 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 APH1AQ96BI3 265 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 SHARPINQ9H0F6 387 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 SH3BGRL3Q9H299 93 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 BCO1Q9HAY6 547 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 MEMO1Q9Y316 297 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 NEURL1O76050 574 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 TPPPO94811 219 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 ZNF708P17019 499 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 CCL1P22362 96 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 CRYGSP22914 178 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 LPAR6P43657 344 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 DCAF10Q5QP82 559 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 PRSS54Q6PEW0 395 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 RNF141Q8WVD5 230 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 ARL11Q969Q4 196 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 ZNF286AQ9HBT8 521 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 ZNF175Q9Y473 711 aa11.56□□□□□ -0.56
VPS54-203ENST00000409558 SPENQ96T58 3664 aaKnown RBP11.55□□□□□ -0.56
VPS54-203ENST00000409558 IGHV3-13P01766 116 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 IGHV3-7P01780 117 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 SLC25A4P12235 298 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 POLR2GP62487 172 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS54-203ENST00000409558 ACTBL2Q562R1 376 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 RBMXL1Q96E39 390 aaKnown RBP11.55□□□□□ -0.56
VPS54-203ENST00000409558 FANCFQ9NPI8 374 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 LOC102725191A0A1B0GVB3 256 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 FAM24AA6NFZ4 105 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 SIRPB1O00241 398 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 CBX5P45973 191 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 KCNMB1Q16558 191 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 HES3Q5TGS1 186 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 RAB18Q9NP72 206 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 ARHGAP21Q5T5U3 1957 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 ZNF816-ZNF321PA0A0X1KG74 233 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 TBPP20226 339 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 CEBPDP49716 269 aaPredicted RBP11.55□□□□□ -0.56
VPS54-203ENST00000409558 PLP2Q04941 152 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 ZNF273Q14593 569 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 ALKBH6Q3KRA9 238 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 STOML3Q8TAV4 291 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 CPNE4Q96A23 557 aaPredicted RBP11.55□□□□□ -0.56
VPS54-203ENST00000409558 UFSP2Q9NUQ7 469 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 B4GALT7Q9UBV7 327 aa11.55□□□□□ -0.56
VPS54-203ENST00000409558 PLCE1Q9P212 2302 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 OR6C6A6NF89 314 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 SSSCA1O60232 199 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 RHBDL1O75783 438 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CELA3BP08861 270 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CALCRP30988 508 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 NPBWR1P48145 328 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 MEOX1P50221 254 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 TAGLNQ01995 201 aaKnown RBP11.54□□□□□ -0.56
VPS54-203ENST00000409558 AKR1E2Q96JD6 320 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CNTNAP3BQ96NU0 1288 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 TP53RKQ96S44 253 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 KCNS2Q9ULS6 477 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 FBXO7Q9Y3I1 522 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CUL9Q8IWT3 2517 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 M0R036 132 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 ATXN7O15265 892 aaPredicted RBP11.54□□□□□ -0.56
VPS54-203ENST00000409558 OR8U9P0C7N5 309 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CHATP28329 748 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 FOXO1Q12778 655 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 HSD17B13Q7Z5P4 300 aaPredicted RBP11.54□□□□□ -0.56
VPS54-203ENST00000409558 FAM89BQ8N5H3 189 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 OR8U1Q8NH10 309 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CD300LFQ8TDQ1 290 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 TAAR9Q96RI9 348 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 RHOFQ9HBH0 211 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 MLXQ9UH92 298 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 ATG12O94817 140 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 MBPP02686 304 aaPredicted RBP11.54□□□□□ -0.56
VPS54-203ENST00000409558 CST2P09228 141 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 ZNF695Q8IW36 515 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CCDC36Q8IYA8 594 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 NMES1Q9C002 83 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 CYTL1Q9NRR1 136 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 RNF150Q9ULK6 438 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 TRAPPC2LH3BP13 241 aa11.54□□□□□ -0.56
VPS54-203ENST00000409558 MUC1P15941 1255 aaPredicted RBP11.54□□□□□ -0.56
VPS54-203ENST00000409558 ADCYAP1P18509 176 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms