RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 BANF2Q9H503 90 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 UBTD1Q9HAC8 227 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 IFNA6P05013 189 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 MGMTP16455 207 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 CPT2P23786 658 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 KLF3P57682 345 aaPredicted RBP11.42□□□□□ -0.58
LIMS1-204ENST00000409441 FAM3AP98173 230 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 IKZF1Q13422 519 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 SCGB2B2Q4G0G5 96 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 CLVS2Q5SYC1 327 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 TMEM42Q69YG0 159 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 OR2T2Q6IF00 324 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 LPCAT3Q6P1A2 487 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 LHFPL2Q6ZUX7 228 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 SLC25A42Q86VD7 318 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 FBXL14Q8N1E6 418 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 MUC15Q8N387 334 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 FTMTQ8N4E7 242 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 GVQW1Q8N7I0 195 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 ZNF611Q8N823 705 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 OR4K15Q8NH41 348 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 CHST6Q9GZX3 395 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 SLC23A1Q9UHI7 598 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 OPN4Q9UHM6 478 aa11.42□□□□□ -0.58
LIMS1-204ENST00000409441 PTPN13Q12923 2485 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 IGLV3-9A0A075B6K5 115 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 A0A1W2PP11 408 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 PLSCR5A0PG75 271 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 HMSDA8MTL9 139 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 GOSR2O14653 212 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 IGHV3-13P01766 116 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 ACKR3P25106 362 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 HRH1P35367 487 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 HTR2BP41595 481 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 ZNF81P51508 661 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 MST1LQ2TV78 715 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 ALKBH6Q3KRA9 238 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 TEX261Q6UWH6 196 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 ARRDC1Q8N5I2 433 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 OR8H1Q8NGG4 311 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 NPRL2Q8WTW4 380 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 PIGTQ969N2 578 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 ARHGAP5-AS1Q96IT6 56 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 OPA3Q9H6K4 179 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 HEXA-AS1Q9H8Q6 139 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 GPR173Q9NS66 373 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 PLA2G2EQ9NZK7 142 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 PURGQ9UJV8 347 aaKnown RBP11.41□□□□□ -0.58
LIMS1-204ENST00000409441 VSIG4Q9Y279 399 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 U3KQ87 197 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 PLCE1Q9P212 2302 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 CENPEQ02224 2701 aa11.41□□□□□ -0.58
LIMS1-204ENST00000409441 DCHS2Q6V1P9 2916 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 hCG_38984A0A1B0GV85 526 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 CD300LBA8K4G0 201 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 SERPINE3A8MV23 424 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 B9A039 149 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 TSC22D2O75157 780 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 DANCRP0C864 163 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 SELEP16581 610 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 KITLGP21583 273 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 TAS2R31P59538 309 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 UBE2MP61081 183 aaKnown RBP11.4□□□□□ -0.58
LIMS1-204ENST00000409441 ARFRP1Q13795 201 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 OR8B8Q15620 311 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 EFNB3Q15768 340 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 NKPD1Q17RQ9 610 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 OR52W1Q6IF63 320 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 ASCL4Q6XD76 172 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 C1QL2Q7Z5L3 287 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 TMED4Q7Z7H5 227 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 METTL9Q9H1A3 318 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 TAAR3PQ9P1P4 343 aa11.4□□□□□ -0.58
LIMS1-204ENST00000409441 CRYBG3Q68DQ2 2970 aa11.4□□□□□ -0.59
LIMS1-204ENST00000409441 TIMM8AO60220 97 aaPredicted RBP11.39□□□□□ -0.59
LIMS1-204ENST00000409441 SLC22A5O76082 557 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 CD8AP01732 235 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 CSN2P05814 226 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 SOD3P08294 240 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 SERPINA2P20848 420 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 ZBTB25P24278 435 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 RBP2P50120 134 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 MTCP1P56278 107 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 H2BFSP57053 126 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 KRTAP10-9P60411 292 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 GMFBP60983 142 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 SRSF4Q08170 494 aaKnown RBP11.39□□□□□ -0.59
LIMS1-204ENST00000409441 DHRS2Q13268 280 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 SWI5Q1ZZU3 235 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 C11orf88Q6PI97 169 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 LYG2Q86SG7 212 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 HOGA1Q86XE5 327 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 BHLHE23Q8NDY6 225 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 ZNF680Q8NEM1 530 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 OR5D18Q8NGL1 313 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 ST8SIA4Q92187 359 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 SCGB3A2Q96PL1 93 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 PECRQ9BY49 303 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 LAMP3Q9UQV4 416 aa11.39□□□□□ -0.59
LIMS1-204ENST00000409441 HECTD1Q9ULT8 2610 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms