RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 TUSC2O75896 110 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 PSMB6P28072 239 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 NKX2-1P43699 371 aaPredicted RBP6.45□□□□□ -1.38
SCN9A-202ENST00000409435 OR3A1P47881 315 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 CEBPDP49716 269 aaPredicted RBP6.45□□□□□ -1.38
SCN9A-202ENST00000409435 COX19Q49B96 90 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 SLC35G3Q8N808 338 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 OR4C16Q8NGL9 310 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 OR2T6Q8NHC8 308 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 LGALS14Q8TCE9 139 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 KIRREL1Q96J84 757 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 SIGLEC12Q96PQ1 595 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 NPAS1Q99742 590 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 TMEM208Q9BTX3 173 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 OR51M1Q9H341 326 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 ST8SIA5O15466 376 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 SORBS2O94875 1100 aaKnown RBP6.45□□□□□ -1.38
SCN9A-202ENST00000409435 COX6CP09669 75 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 SNRPBP14678 240 aaKnown RBP6.45□□□□□ -1.38
SCN9A-202ENST00000409435 CA7P43166 264 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 COMPP49747 757 aaPredicted RBP6.45□□□□□ -1.38
SCN9A-202ENST00000409435 ERVFC1-1P60608 527 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 SRSF9Q13242 221 aaKnown RBP eCLIP6.45□□□□□ -1.38
SCN9A-202ENST00000409435 DPPA3Q6W0C5 159 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 OR5AU1Q8NGC0 362 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 TMEM163Q8TC26 289 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 VCX2Q9H322 139 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 NRIP3Q9NQ35 241 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 TAS2R5Q9NYW4 299 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF236Q9UL36 1845 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 A0A0A6YYD5 115 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 C1QAP02745 245 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 CRISP2P16562 243 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 FAM3AP98173 230 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 TEX30Q5JUR7 227 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 OR1F12Q8NHA8 337 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 EGLN2Q96KS0 407 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 C4orf45Q96LM5 186 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 NMES1Q9C002 83 aa6.45□□□□□ -1.38
SCN9A-202ENST00000409435 VIRMAQ69YN4 1812 aaKnown RBP6.45□□□□□ -1.38
SCN9A-202ENST00000409435 IFITM10A6NMD0 228 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 OPN1MWP04001 364 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 OPN1MW2P0DN77 364 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 OPN1MW3P0DN78 364 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 COX5AP20674 150 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 ALKBH1Q13686 389 aaKnown RBP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 PIP4P1Q86T03 277 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 SLC26A10Q8NG04 563 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 OR10P1Q8NGE3 313 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 PRSS3P2Q8NHM4 247 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 TDRD15B5MCY1 1934 aaKnown RBP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 TPRP12270 2363 aaKnown RBP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 SNRPGP15A8MWD9 76 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 RAB27BO00194 218 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 FCN1O00602 326 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 EPPINO95925 133 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 GCGP01275 180 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 RRASP10301 218 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 RPL12P30050 165 aaKnown RBP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 LGALS7P47929 136 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 LSM11P83369 360 aaKnown RBP eCLIP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF117Q03924 483 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 ACVR1Q04771 509 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 AQP6Q13520 282 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 SSX1Q16384 188 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 GABRA6Q16445 453 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 TMEM81Q6P7N7 255 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 MOGAT3Q86VF5 341 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 OR4X2Q8NGF9 303 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 ABHD3Q8WU67 409 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 SFRP2Q96HF1 295 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 Q9N2K0 584 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 A4GALTQ9NPC4 353 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 NSG2Q9Y328 171 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 UPK1AO00322 258 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 NME4O00746 187 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 JUNBP17275 347 aaPredicted RBP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 TNFRSF1BP20333 461 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 FOXA1P55317 472 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 Q0VFX4 171 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 KCNMB1Q16558 191 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 ADPRMQ3LIE5 342 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 SLC16A12Q6ZSM3 486 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 Q96MF0 132 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 WDR76Q9H967 626 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 HEYLQ9NQ87 328 aaPredicted RBP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 CBLN4Q9NTU7 201 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 SELENOFO60613 162 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 CA2P00918 260 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 MMP15P51511 669 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 CNN1P51911 297 aaKnown RBP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 CLDN20P56880 219 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 PJVKQ0ZLH3 352 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 GUCA2BQ16661 112 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 ASCL4Q6XD76 172 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 DOK3Q7L591 496 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 FUNDC1Q8IVP5 155 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 TMEM158Q8WZ71 300 aa6.44□□□□□ -1.38
SCN9A-202ENST00000409435 RPL3LQ92901 407 aaKnown RBP6.44□□□□□ -1.38
SCN9A-202ENST00000409435 PTP4A1Q93096 173 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms