RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 OCMP0CE72 109 aaPredicted RBP7.64□□□□□ -1.19
VPS53-203ENST00000401468 PPIAL4FP0DN26 164 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 TMEM225BP0DP42 221 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 IRF2P14316 349 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 AMY2BP19961 511 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 BCL3P20749 454 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 LMO1P25800 156 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 HTR2CP28335 458 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 RPS19P39019 145 aaKnown RBP7.64□□□□□ -1.19
VPS53-203ENST00000401468 POU3F4P49335 361 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 FGF12P61328 243 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 VBP1P61758 197 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 DYNC1I2Q13409 638 aaKnown RBP7.64□□□□□ -1.19
VPS53-203ENST00000401468 GPR176Q14439 515 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 DGUOKQ16854 277 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 SMIM21Q3B7S5 101 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 SPIN3Q5JUX0 258 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 SFXN4Q6P4A7 337 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 OR2W3Q7Z3T1 314 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 CLVS1Q8IUQ0 354 aaPredicted RBP7.64□□□□□ -1.19
VPS53-203ENST00000401468 CROCCP3Q8IVE0 287 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 FAM58AQ8N1B3 248 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 MUC20Q8N307 709 aaPredicted RBP7.64□□□□□ -1.19
VPS53-203ENST00000401468 JAGN1Q8N5M9 183 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 LINC01356Q8N9X3 169 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 OR5D18Q8NGL1 313 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 C22orf15Q8WYQ4 148 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 TMEM158Q8WZ71 300 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 RAB1CQ92928 201 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 PTX4Q96A99 478 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 ISOC1Q96CN7 298 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 GPER1Q99527 375 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 TMEM246Q9BRR3 403 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 RBFOX1Q9NWB1 397 aaKnown RBP7.64□□□□□ -1.19
VPS53-203ENST00000401468 HIF1ANQ9NWT6 349 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 NDUFA13Q9P0J0 144 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 NLKQ9UBE8 527 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 MRPS28Q9Y2Q9 187 aaKnown RBP7.64□□□□□ -1.19
VPS53-203ENST00000401468 PPIAL4AQ9Y536 164 aa7.64□□□□□ -1.19
VPS53-203ENST00000401468 TRAV38-1A0A0B4J264 116 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 ISPDA4D126 451 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 DPPA5A6NC42 116 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A10PA6NDY2 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A18PA6NE21 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A16PA6NEW6 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A20PA6NIJ5 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A8PA6NJQ4 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A7PA6NKC0 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 OR2AT4A6NND4 320 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A22PA8MWA6 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A12PA8MX19 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A5PA8MXJ8 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A23PA8MXZ1 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FCN3O75636 299 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 ZNF205O95201 554 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 CYB5AP00167 134 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 CLEC2LP0C7M8 214 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A15PP0C7V4 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A13PP0C7W8 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A14PP0C7W9 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM90A24PP0C7X0 464 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 PSG2P11465 335 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 GLRA1P23415 457 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 CD80P33681 288 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 RBM11P57052 281 aaKnown RBP7.63□□□□□ -1.19
VPS53-203ENST00000401468 LMO4P61968 165 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 LSM3P62310 102 aaKnown RBP7.63□□□□□ -1.19
VPS53-203ENST00000401468 PAX5Q02548 391 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 UNC119Q13432 240 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 IL13RA2Q14627 380 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 SPCS2Q15005 226 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 KCNJ8Q15842 424 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 RAB11BQ15907 218 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 MICBQ29980 383 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM201AQ5SY85 155 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAHD2BQ6P2I3 314 aaPredicted RBP7.63□□□□□ -1.19
VPS53-203ENST00000401468 GLIPR1L1Q6UWM5 242 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 ZNF841Q6ZN19 808 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 ZNF788Q6ZQV5 615 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 DCDC5Q6ZRR9 648 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 USP43Q70EL4 1123 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 PEG10Q86TG7 708 aaKnown RBP7.63□□□□□ -1.19
VPS53-203ENST00000401468 LINC00596Q86U02 117 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAM89BQ8N5H3 189 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.63□□□□□ -1.19
VPS53-203ENST00000401468 NDNFQ8TB73 568 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 DYNC2LI1Q8TCX1 351 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 SDSLQ96GA7 329 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 FAHD2AQ96GK7 314 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 TIMD4Q96H15 378 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 Q96M66 194 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 ZNF488Q96MN9 340 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 NKX3-1Q99801 234 aaPredicted RBP7.63□□□□□ -1.19
VPS53-203ENST00000401468 MRI1Q9BV20 369 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 TM2D1Q9BX74 207 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 KRTAP9-9Q9BYP9 154 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 KRTAP9-4Q9BYQ2 154 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 BARHL1Q9BZE3 327 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 METTL9Q9H1A3 318 aa7.63□□□□□ -1.19
VPS53-203ENST00000401468 PCDHB16Q9NRJ7 776 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms