RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 STARD4Q96DR4 205 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 SNX22Q96L94 193 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 ASCL3Q9NQ33 180 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 TECRQ9NZ01 308 aaKnown RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 TRAPPC1Q9Y5R8 145 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 PPLO60437 1756 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 IGKV3D-15A0A087WSY6 115 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 UBE2L6O14933 153 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 IGKV3-15P01624 115 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 COL9A1P20849 921 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 RPS4Y1P22090 263 aaKnown RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 HIST1H3AP68431 136 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 ZNF154Q13106 437 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 TM4SF20Q53R12 229 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 TMEM215Q68D42 235 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 OR2W3Q7Z3T1 314 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 SHISA5Q8N114 240 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 RELL2Q8NC24 303 aaPredicted RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 ZCCHC14Q8WYQ9 949 aaKnown RBP6.37□□□□□ -1.39
UPF2-203ENST00000397053 DCTN5Q9BTE1 182 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 CDCA4Q9BXL8 241 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 SEC11CQ9BY50 192 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 SPNS1Q9H2V7 528 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 FLVCR2Q9UPI3 526 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 CACNA1HO95180 2353 aa6.37□□□□□ -1.39
UPF2-203ENST00000397053 A0A1W2PNV4 684 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 MFSD2BA6NFX1 497 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 MFNGO00587 321 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 FCN1O00602 326 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 HIST1H1DP16402 221 aaKnown RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 BCL3P20749 454 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 INO80CQ6PI98 192 aaPredicted RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 ZNF66Q6ZN08 573 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 OR52M1Q8NGK5 317 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 PACRGQ96M98 296 aaPredicted RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 UQCC2Q9BRT2 126 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 NKX6-2Q9C056 277 aaPredicted RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 TMEM167BQ9NRX6 74 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 NPAP1Q9NZP6 1156 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 LPAR3Q9UBY5 353 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 A0A1W2PS18 150 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 GPX5O75715 221 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 FAM106CPP0CH98 169 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 GABRB1P18505 474 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 CTGFP29279 349 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 CD96P40200 585 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 RNF212Q495C1 297 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 LILRA6Q6PI73 481 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 MRGPRGQ86SM5 289 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 LINC01465Q8N7H1 131 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 SLC26A10Q8NG04 563 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 OR4B1Q8NGF8 309 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 OR5C1Q8NGR4 320 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 RAX2Q96IS3 184 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 SF3B5Q9BWJ5 86 aaKnown RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 WSB1Q9Y6I7 421 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 U3KQ87 197 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 A0A0B4J2E0 115 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 A0A1B0GX12 115 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 SMPD2O60906 423 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 HAND1O96004 215 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 IGFBP6P24592 240 aaPredicted RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 GCAP28676 217 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 SLC25A1P53007 311 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 ISL1P61371 349 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 FABP5Q01469 135 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 WDR38Q5JTN6 314 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 C1orf185Q5T7R7 199 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 UNQ9370/PRO34162Q6UXP9 181 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 PRSS41Q7RTY9 318 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 COMMD1Q8N668 190 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 OR1L8Q8NGR8 309 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 C2CD4CQ8TF44 421 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 SNRNP40Q96DI7 357 aaKnown RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 WDR89Q96FK6 387 aaPredicted RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 NXF2Q9GZY0 626 aaKnown RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 CISD1Q9NZ45 108 aaKnown RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 PRNDQ9UKY0 176 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 ASB1Q9Y576 335 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 HILPDAQ9Y5L2 63 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 PEAK1Q9H792 1746 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 OOEPA6NGQ2 149 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 CBY3A6NI87 242 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 RANP62826 216 aaKnown RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 FAM78BQ5VT40 261 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 NTNG2Q96CW9 530 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 PIMREGQ9BSJ6 248 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 RSG1Q9BU20 258 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 VAMP8Q9BV40 100 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 WDR13Q9H1Z4 485 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 AUNIPQ9H7T9 357 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 TMEM140Q9NV12 185 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 SLC25A10Q9UBX3 287 aaPredicted RBP6.36□□□□□ -1.39
UPF2-203ENST00000397053 KLK11Q9UBX7 282 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 NOTCH2Q04721 2471 aa6.36□□□□□ -1.39
UPF2-203ENST00000397053 C3orf85A0A1B0GTC6 90 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 ZNF324O75467 553 aaPredicted RBP6.35□□□□□ -1.39
UPF2-203ENST00000397053 GCSHP23434 173 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 GUCA2AQ02747 115 aa6.35□□□□□ -1.39
UPF2-203ENST00000397053 ADIPOQQ15848 244 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms