RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 H0YL77 283 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 H3BQ15 152 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 TERTO14746 1132 aaKnown RBP14.18□□□□□ -0.14
SDC4-201ENST00000372733 PATE4P0C8F1 98 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 MAS1LP35410 378 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 RBP2P50120 134 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 AFF3P51826 1226 aaKnown RBP14.18□□□□□ -0.14
SDC4-201ENST00000372733 CNN3Q15417 329 aaKnown RBP14.18□□□□□ -0.14
SDC4-201ENST00000372733 C5orf24Q7Z6I8 188 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 OSR2Q8N2R0 312 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 RAB39BQ96DA2 213 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 C11orf1Q9H5F2 150 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 ST3GAL6Q9Y274 331 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 A0A1B0GW64 132 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 SSSCA1O60232 199 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 LCATP04180 440 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 HIKESHIQ53FT3 197 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 C1QL4Q86Z23 238 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 MAML2Q8IZL2 1156 aaPredicted RBP14.18□□□□□ -0.14
SDC4-201ENST00000372733 GPHA2Q96T91 129 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 TOLLIPQ9H0E2 274 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 FOXD3Q9UJU5 478 aaPredicted RBP14.18□□□□□ -0.14
SDC4-201ENST00000372733 LIPGQ9Y5X9 500 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 WDFY3Q8IZQ1 3526 aa14.18□□□□□ -0.14
SDC4-201ENST00000372733 CCDC163A0A0D9SF12 145 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 FBP1P09467 338 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 RND3P61587 244 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 ZIC4Q8N9L1 334 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 CCDC71LQ8N9Z2 235 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 OR14L1PQ8NHC6 308 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 BCO1Q9HAY6 547 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 GLRX2Q9NS18 164 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 CA14Q9ULX7 337 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 C3orf85A0A1B0GTC6 90 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 PITX3O75364 302 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 PPYP01298 95 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 HTR5AP47898 357 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 RAB2AP61019 212 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 CDPF1Q6NVV7 123 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 CCDC54Q8NEL0 328 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 CADM4Q8NFZ8 388 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 NTNG2Q96CW9 530 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 URGCP-MRPS24S4R325 110 aa14.17□□□□□ -0.14
SDC4-201ENST00000372733 ATXN7O15265 892 aaPredicted RBP14.16□□□□□ -0.14
SDC4-201ENST00000372733 NXPH3O95157 252 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 NRASP01111 189 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 TAGLN2P37802 199 aaKnown RBP14.16□□□□□ -0.14
SDC4-201ENST00000372733 NKX2-1P43699 371 aaPredicted RBP14.16□□□□□ -0.14
SDC4-201ENST00000372733 RUNX1Q01196 453 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 ZNF266Q14584 549 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 RAB35Q15286 201 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 LHFPL2Q6ZUX7 228 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.16□□□□□ -0.14
SDC4-201ENST00000372733 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.16□□□□□ -0.14
SDC4-201ENST00000372733 TRDCB7Z8K6 153 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 HSD17B6O14756 317 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 MPPED1O15442 326 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 SYNGR3O43761 229 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 PDCD6O75340 191 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 CST7O76096 145 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 CXCL1P09341 107 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 UCP3P55916 312 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 NDUFA6P56556 154 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 RAB30Q15771 203 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 C9orf152Q5JTZ5 239 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 FAM27BQ5VT28 67 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 ZNF385CQ66K41 422 aaPredicted RBP14.16□□□□□ -0.14
SDC4-201ENST00000372733 Q8WTZ3 238 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 ZNF442Q9H7R0 627 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 P4HTMQ9NXG6 502 aa14.16□□□□□ -0.14
SDC4-201ENST00000372733 TP53I11O14683 189 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 TNFSF11O14788 317 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 SRP19P09132 144 aaKnown RBP14.15□□□□□ -0.14
SDC4-201ENST00000372733 CCL3P10147 92 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 HOXA5P20719 270 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 EPHA1P21709 976 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 UBE2KP61086 200 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 MRPS34P82930 218 aaKnown RBP14.15□□□□□ -0.14
SDC4-201ENST00000372733 ZNF674Q2M3X9 581 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 PYY3Q5JQD4 70 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 OR2B11Q5JQS5 317 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 CXorf66Q5JRM2 361 aaPredicted RBP14.15□□□□□ -0.14
SDC4-201ENST00000372733 ASCL4Q6XD76 172 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 TMEM217Q8N7C4 229 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 CYB561D1Q8N8Q1 229 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 OR5C1Q8NGR4 320 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 PAPOLGQ9BWT3 736 aaKnown RBP14.15□□□□□ -0.14
SDC4-201ENST00000372733 SRXN1Q9BYN0 137 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 RARRES3Q9UL19 164 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 SLC7A11Q9UPY5 501 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 MALLQ13021 153 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 TMEM252Q8N6L7 170 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 OR1F12Q8NHA8 337 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 TMEM222Q9H0R3 208 aa14.15□□□□□ -0.14
SDC4-201ENST00000372733 SDK2Q58EX2 2172 aa14.15□□□□□ -0.15
SDC4-201ENST00000372733 A0A0J9YW62 118 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 ADAM20O43506 726 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 OR7C1O76099 320 aaPredicted RBP14.14□□□□□ -0.15
SDC4-201ENST00000372733 CDS2O95674 445 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 B4GALT1P15291 398 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms