RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 FAM90A5PA8MXJ8 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A23PA8MXZ1 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 DEDDO75618 318 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 ACTL6AO96019 429 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A15PP0C7V4 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A13PP0C7W8 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A14PP0C7W9 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 FAM90A24PP0C7X0 464 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 UCP3P55916 312 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 OR2A2Q6IF42 318 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 UQCC3Q6UW78 93 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 MCEMP1Q8IX19 187 aa17.9■□□□□ 0.46
CCDC88B-203ENST00000359902 IL22RA1Q8N6P7 574 aa17.89■□□□□ 0.46
CCDC88B-203ENST00000359902 ZFP62Q8NB50 900 aaPredicted RBP17.89■□□□□ 0.46
CCDC88B-203ENST00000359902 EXTL1Q92935 676 aa17.89■□□□□ 0.46
CCDC88B-203ENST00000359902 PRSS50Q9UI38 385 aa17.89■□□□□ 0.46
CCDC88B-203ENST00000359902 SHANK1Q9Y566 2161 aa17.89■□□□□ 0.45
CCDC88B-203ENST00000359902 TAAR5O14804 337 aa17.89■□□□□ 0.45
CCDC88B-203ENST00000359902 AADACP22760 399 aa17.89■□□□□ 0.45
CCDC88B-203ENST00000359902 FGF12P61328 243 aa17.89■□□□□ 0.45
CCDC88B-203ENST00000359902 ATP1A1-AS1Q5TC04 95 aa17.89■□□□□ 0.45
CCDC88B-203ENST00000359902 LRTM2Q8N967 370 aa17.89■□□□□ 0.45
CCDC88B-203ENST00000359902 SUCNR1Q9BXA5 334 aa17.89■□□□□ 0.45
CCDC88B-203ENST00000359902 MTCH1Q9NZJ7 389 aa17.89■□□□□ 0.45
CCDC88B-203ENST00000359902 ZNF732B4DXR9 585 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 TRIM77I1YAP6 450 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 RPL12P30050 165 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 GLP1RP43220 463 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 PLP2Q04941 152 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 RPL7L1Q6DKI1 246 aaKnown RBP17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 OR11L1Q8NGX0 322 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 RSRP1Q9BUV0 290 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 DEFB127Q9H1M4 99 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 K7EPK0 472 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 TSPAN4O14817 238 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 IGSF11Q5DX21 431 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 LIAT1Q6ZQX7 453 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 LYZL2Q7Z4W2 148 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 FAM71E2Q8N5Q1 922 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 OR5L1Q8NGL2 311 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 GLYATL2Q8WU03 294 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 C18orf12Q96KH6 178 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 PRRX2Q99811 253 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 ZNF552Q9H707 407 aaPredicted RBP17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 ZC4H2Q9NQZ6 224 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 PLSCR2Q9NRY7 297 aa17.88■□□□□ 0.45
CCDC88B-203ENST00000359902 TNRC6AQ8NDV7 1962 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 ZNF806P0C7X5 589 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 GLI4P10075 376 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 CD46P15529 392 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 SMCO1Q147U7 214 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 MSI2Q96DH6 328 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 NARS2Q96I59 477 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 SYT3Q9BQG1 590 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 TMEM9BQ9NQ34 198 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 LSM5Q9Y4Y9 91 aaKnown RBP17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 ARID1AO14497 2285 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 CD300LBA8K4G0 201 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 LRP3O75074 770 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 ARHGDIBP52566 201 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 Q6ZS49 121 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 OR5A2Q8NGI9 324 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 LRRC46Q96FV0 321 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 C12orf49Q9H741 205 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 IL36RNQ9UBH0 155 aa17.87■□□□□ 0.45
CCDC88B-203ENST00000359902 PRSS44E7EML9 344 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 H7C1Q1 480 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 IL18BPO95998 194 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 PPYP01298 95 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 MBPP02686 304 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 HERV-K104P61576 105 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 ZNF273Q14593 569 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 TGIF1Q15583 401 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 MST1LQ2TV78 715 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 HIKESHIQ53FT3 197 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 RNFT1Q5M7Z0 435 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 WDYHV1Q96HA8 205 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 TAF9BQ9HBM6 251 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 LPAR3Q9UBY5 353 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 AMDHD2Q9Y303 409 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 SCGB1D2O95969 90 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 NAPSAO96009 420 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 IL32P24001 234 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 WNT5AP41221 380 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 EIF5AP63241 154 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 DEFA5Q01523 94 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 MKXQ8IYA7 352 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 OR5T2Q8NGG2 359 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 ARL11Q969Q4 196 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 Q9N2K0 584 aa17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 RCC2Q9P258 522 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-203ENST00000359902 ZNF705EA8MWA4 302 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-203ENST00000359902 RCC1P18754 421 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-203ENST00000359902 SRSF7Q16629 238 aaKnown RBP eCLIP17.85■□□□□ 0.45
CCDC88B-203ENST00000359902 C5orf24Q7Z6I8 188 aa17.85■□□□□ 0.45
CCDC88B-203ENST00000359902 HIST1H2AAQ96QV6 131 aa17.85■□□□□ 0.45
CCDC88B-203ENST00000359902 OPA3Q9H6K4 179 aa17.85■□□□□ 0.45
CCDC88B-203ENST00000359902 SPRR3Q9UBC9 169 aa17.85■□□□□ 0.45
CCDC88B-203ENST00000359902 ARHGAP21Q5T5U3 1957 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms