RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 A0A0X1KG70 313 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 PQLC2LA1A4F0 135 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 GTF2F2P13984 249 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 CDK2P24941 298 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 TMEM69Q5SWH9 247 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 OR4M2Q8NGB6 313 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 H1FXQ92522 213 aaKnown RBP7.76□□□□□ -1.17
USP4-202ENST00000351842 FAAP24Q9BTP7 215 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 OR51I2Q9H344 312 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 SCPEP1Q9HB40 452 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 ZNF230Q9UIE0 474 aaPredicted RBP7.76□□□□□ -1.17
USP4-202ENST00000351842 FABP12A6NFH5 140 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 OR5B21A6NL26 309 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 PHF1O43189 567 aaPredicted RBP7.76□□□□□ -1.17
USP4-202ENST00000351842 DANCRP0C864 163 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 NDUFB7P17568 137 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 TNFRSF1AP19438 455 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 ART1P52961 327 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 DLX1P56177 255 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 TMEM42Q69YG0 159 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 TPRA1Q86W33 373 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 PDZD9Q8IXQ8 264 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 FAM216BQ8N7L0 139 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 GDPD1Q8N9F7 314 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 ARHGAP5-AS1Q96IT6 56 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 CST11Q9H112 138 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 FN3KRPQ9HA64 309 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 CHMP1AQ9HD42 196 aaPredicted RBP7.76□□□□□ -1.17
USP4-202ENST00000351842 PLEKHJ1Q9NW61 149 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 PCDHB10Q9UN67 800 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 HIVEP2P31629 2446 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 MNDAP41218 407 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 UTS2BQ765I0 119 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 KRT74Q7RTS7 529 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 BIVMQ86UB2 503 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 FAM58AQ8N1B3 248 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 CELF2-AS1Q8N7Q2 184 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 BOD1Q96IK1 185 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 ST6GAL2Q96JF0 529 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 PLEKHF2Q9H8W4 249 aa7.76□□□□□ -1.17
USP4-202ENST00000351842 J3QT63 122 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 APOA1P02647 267 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 CD3GP09693 182 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 FSTP19883 344 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 ERVFRD-1P60508 538 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 MZT2AQ6P582 158 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 OSR2Q8N2R0 312 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 GCSAMQ8N6F7 178 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 OR11L1Q8NGX0 322 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 OR4K15Q8NH41 348 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 THRSPQ92748 146 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 TECTBQ96PL2 329 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 OR10A4Q9H209 315 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 HMX3A6NHT5 357 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 IL7P13232 177 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 BAK1Q16611 211 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 MICBQ29980 383 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 CRIP3Q6Q6R5 217 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 CCDC28AQ8IWP9 274 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 ST8SIA4Q92187 359 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 SLC25A38Q96DW6 304 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 TMEM204Q9BSN7 226 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 DCTN5Q9BTE1 182 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 ST6GALNAC5Q9BVH7 336 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 AUNIPQ9H7T9 357 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 TMEM106BQ9NUM4 274 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 ZDHHC8Q9ULC8 765 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 POLDIP2Q9Y2S7 368 aa7.75□□□□□ -1.17
USP4-202ENST00000351842 RAI1Q7Z5J4 1906 aaPredicted RBP7.75□□□□□ -1.17
USP4-202ENST00000351842 LRRC30A6NM36 301 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 J3QW42 95 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 ADAM20O43506 726 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 CD1AP06126 327 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 OMGP23515 440 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 PAN3Q58A45 887 aaKnown RBP7.74□□□□□ -1.17
USP4-202ENST00000351842 PXDC1Q5TGL8 231 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 FAAP20Q6NZ36 180 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 FAM122CQ6P4D5 195 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 FAM90A1Q86YD7 464 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 C11orf53Q8IXP5 236 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 RFESDQ8TAC1 157 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 IL1F10Q8WWZ1 152 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 YIPF5Q969M3 257 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 S100A16Q96FQ6 103 aaKnown RBP7.74□□□□□ -1.17
USP4-202ENST00000351842 NEDD4LQ96PU5 975 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 RNF7Q9UBF6 113 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 OR2AT4A6NND4 320 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 DEGS1O15121 323 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 HLA-DMAP28067 261 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 CBX5P45973 191 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 ZP1P60852 638 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 MRPS15P82914 257 aaKnown RBP7.74□□□□□ -1.17
USP4-202ENST00000351842 AESQ08117 197 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 SWI5Q1ZZU3 235 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 RAB12Q6IQ22 244 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 LYPD2Q6UXB3 125 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 NRARPQ7Z6K4 114 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 KCNG3Q8TAE7 436 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 PHYHIPQ92561 330 aa7.74□□□□□ -1.17
USP4-202ENST00000351842 SPOCK3Q9BQ16 436 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms