RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CCDC54Q8NEL0 328 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 SECTM1Q8WVN6 248 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 HRH4Q9H3N8 390 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 C12orf4Q9NQ89 552 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 IGKV3D-15A0A087WSY6 115 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 KRBOX1C9JBD0 128 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 KLRC4-KLRK1H3BQV0 150 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 LRP3O75074 770 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 FUT3P21217 361 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 NME2P22392 152 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 HERV-K104P61576 105 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 SRSF3P84103 164 aaKnown RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 TRIP6Q15654 476 aaKnown RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 NSUN5P2Q63ZY6 315 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 RTL6Q6ICC9 239 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 HSD17B13Q7Z5P4 300 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 SUMF1Q8NBK3 374 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 REPIN1Q9BWE0 567 aaKnown RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 PRDM14Q9GZV8 571 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 SLC2A9Q9NRM0 540 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 CRYM-AS1A6NIL9 109 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF705EA8MWA4 302 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 SCTP09683 121 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 CD46P15529 392 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 SELEP16581 610 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 PRKACAP17612 351 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 ID4P47928 161 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 EIF3IQ13347 325 aaKnown RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DAZAP2Q15038 168 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF528Q3MIS6 628 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 ZDHHC23Q8IYP9 409 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DEFB124Q8NES8 71 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 FER1L6-AS2Q96M78 137 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 HIST1H2AAQ96QV6 131 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 ADAT1Q9BUB4 502 aaKnown RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 MTCH1Q9NZJ7 389 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 SPRR3Q9UBC9 169 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 HSF4Q9ULV5 492 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 KCNIP3Q9Y2W7 256 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 KLF13Q9Y2Y9 288 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 MED12LQ86YW9 2145 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 PTPRZ1P23471 2315 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 CACNA1DQ01668 2161 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 ESPL1Q14674 2120 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 A0A1B0GW55 424 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 CELA3BP08861 270 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DUX4L2P0CJ85 424 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DUX4L3P0CJ86 424 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DUX4L4P0CJ87 422 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DUX4L5P0CJ88 424 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DUX4L6P0CJ89 424 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DUX4L7P0CJ90 424 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 CA6P23280 308 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 GLP1RP43220 463 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 PLEKHN1Q494U1 663 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF766Q5HY98 468 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 ALKBH2Q6NS38 261 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 PRR18Q8N4B5 295 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 BSCL2Q96G97 398 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-201ENST00000341247 DUX4Q9UBX2 424 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 EDARQ9UNE0 448 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 MEMO1Q9Y316 297 aa8.89□□□□□ -0.99
LIMA1-201ENST00000341247 MED19A0JLT2 244 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 CD300LBA8K4G0 201 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 K7EPK0 472 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 TNFSF12O43508 249 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 APLNRP35414 380 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 CLN3Q13286 438 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 FAM71E2Q8N5Q1 922 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 APOBEC3DQ96AK3 386 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 MED9Q9NWA0 146 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 DIDO1Q9BTC0 2240 aaKnown RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF318Q5VUA4 2279 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 NME2P1O60361 137 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 F12P00748 615 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 WNT5AP41221 380 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 ERVS71-1P61550 626 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 SMCO1Q147U7 214 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 PPA1Q15181 289 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 SURF2Q15527 256 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 MDP1Q86V88 176 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 MYPOPQ86VE0 399 aaPredicted RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 OR52M1Q8NGK5 317 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 LRRC46Q96FV0 321 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 FAM117AQ9C073 453 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 NAA60Q9H7X0 242 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF391Q9UJN7 358 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 FAM96BQ9Y3D0 163 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 SVEP1Q4LDE5 3571 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 TRGV5A0A0B4J1U4 118 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 SLC22A20A6NK97 555 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 TRAPPC2LH3BP13 241 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 LINC01387J3KSC0 135 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 RRP8O43159 456 aaKnown RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 RHBDL1O75783 438 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 LYZL6O75951 148 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 HKR1P10072 659 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 DTYMKP23919 212 aa8.88□□□□□ -0.99
LIMA1-201ENST00000341247 RPL12P30050 165 aaKnown RBP8.88□□□□□ -0.99
LIMA1-201ENST00000341247 IDH3GP51553 393 aaPredicted RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms