RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 DOK3Q7L591 496 aa12.72□□□□□ -0.37
PTPN9-201ENST00000306726 LGI3Q8N145 548 aa12.72□□□□□ -0.37
PTPN9-201ENST00000306726 ZNF611Q8N823 705 aa12.72□□□□□ -0.37
PTPN9-201ENST00000306726 NMES1Q9C002 83 aa12.72□□□□□ -0.37
PTPN9-201ENST00000306726 PLK3Q9H4B4 646 aa12.72□□□□□ -0.37
PTPN9-201ENST00000306726 COL5A1P20908 1838 aaPredicted RBP12.71□□□□□ -0.37
PTPN9-201ENST00000306726 ADAM20O43506 726 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 CLPSP04118 112 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 G0S2P27469 103 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 PMP22Q01453 160 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 ZNF239Q16600 458 aaKnown RBP12.71□□□□□ -0.37
PTPN9-201ENST00000306726 DHRS7BQ6IAN0 325 aaPredicted RBP12.71□□□□□ -0.37
PTPN9-201ENST00000306726 CYB561D1Q8N8Q1 229 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 NOXO1Q8NFA2 376 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 UFSP2Q9NUQ7 469 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 WNK2Q9Y3S1 2297 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 A0A087WZY1 265 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 TRGC2P03986 189 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 GSTP1P09211 210 aaKnown RBP12.71□□□□□ -0.37
PTPN9-201ENST00000306726 MMP7P09237 267 aaPredicted RBP12.71□□□□□ -0.37
PTPN9-201ENST00000306726 GABRA4P48169 554 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 TGFBR3Q03167 851 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 FAM166AQ6J272 317 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 WDR74Q6RFH5 385 aaPredicted RBP12.71□□□□□ -0.37
PTPN9-201ENST00000306726 IL34Q6ZMJ4 242 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 ADAMTS17Q8TE56 1095 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 PPP1R3CQ9UQK1 317 aa12.71□□□□□ -0.37
PTPN9-201ENST00000306726 USF3Q68DE3 2245 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 NSG1A0A0A6YYJ2 146 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 IGKV3-11P04433 115 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 THEM4Q5T1C6 240 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 FNDC7Q5VTL7 733 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 AADACL3Q5VUY0 350 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 SSX9Q7RTT3 188 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 CMTM1Q8IZ96 169 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 FRZBQ92765 325 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 EDEM2Q9BV94 578 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 RARRES3Q9UL19 164 aa12.71□□□□□ -0.38
PTPN9-201ENST00000306726 IGHV1OR21-1A0A087WYE8 117 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 SLC35A1P78382 337 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 MALLQ13021 153 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 SLC35G3Q8N808 338 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 MARS2Q96GW9 593 aaKnown RBP12.7□□□□□ -0.38
PTPN9-201ENST00000306726 WFDC1Q9HC57 220 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 SLC2A9Q9NRM0 540 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 ZMAT5Q9UDW3 170 aaKnown RBP12.7□□□□□ -0.38
PTPN9-201ENST00000306726 CXCL13O43927 109 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 WDR1O75083 606 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 AADACP22760 399 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 APOBEC1P41238 236 aaKnown RBP12.7□□□□□ -0.38
PTPN9-201ENST00000306726 NSUN5P2Q63ZY6 315 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 SLC16A14Q7RTX9 510 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.7□□□□□ -0.38
PTPN9-201ENST00000306726 IL36RNQ9UBH0 155 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 MT-ND4LP03901 98 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 GALNSP34059 522 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 DCAF7P61962 342 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 TRA2AQ13595 282 aaKnown RBP eCLIP12.7□□□□□ -0.38
PTPN9-201ENST00000306726 LILRB2Q8N423 598 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 EIF4E3Q8N5X7 224 aaKnown RBP12.7□□□□□ -0.38
PTPN9-201ENST00000306726 ANXA10Q9UJ72 324 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 WASF3Q9UPY6 502 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 MMACHCQ9Y4U1 282 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 PLCE1Q9P212 2302 aa12.7□□□□□ -0.38
PTPN9-201ENST00000306726 TMEM14DPA8MWL7 114 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 ZFAND5O76080 213 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 CSRP1P21291 193 aaKnown RBP12.69□□□□□ -0.38
PTPN9-201ENST00000306726 MSR1P21757 451 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 SSBP1Q04837 148 aaKnown RBP12.69□□□□□ -0.38
PTPN9-201ENST00000306726 GUSBP11Q6P575 273 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 SPTSSAQ969W0 71 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 SYT3Q9BQG1 590 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 PLA2G2EQ9NZK7 142 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 OR14J1Q9UGF5 321 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 ARFGEF3Q5TH69 2177 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 SMCO3A2RU48 225 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 PPP1R2P9O14990 202 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 NDUFA2O43678 99 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 SERPINE2P07093 398 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 DEFA4P12838 97 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 NPBWR2P48146 333 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 PHYHD1Q5SRE7 291 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 ZNF468Q5VIY5 522 aaPredicted RBP12.69□□□□□ -0.38
PTPN9-201ENST00000306726 ZNF429Q86V71 674 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 GJC3Q8NFK1 279 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 LIPHQ8WWY8 451 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 TMEM37Q8WXS4 190 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 NIPSNAP3BQ9BS92 247 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 RSG1Q9BU20 258 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 DSPP15924 2871 aaKnown RBP12.69□□□□□ -0.38
PTPN9-201ENST00000306726 CCDC187A0A096LP49 1063 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 A0A1B0GV90 55 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 PATE3B3GLJ2 98 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 METTL15P1P0C7V9 234 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 ATP6V0CP27449 155 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 EIF2S3P41091 472 aaKnown RBP12.69□□□□□ -0.38
PTPN9-201ENST00000306726 MECP2P51608 486 aaKnown RBP12.69□□□□□ -0.38
PTPN9-201ENST00000306726 SPANXN5Q5MJ07 72 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 DTX1Q86Y01 620 aa12.69□□□□□ -0.38
PTPN9-201ENST00000306726 POC1AQ8NBT0 407 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms