RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SH2D1BO14796 132 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 PSPNO60542 156 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 MMP23AO75900 390 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 AMY1AP04745 511 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 AMY2AP04746 511 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 LMO1P25800 156 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 RBP2P50120 134 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 ATP1B3P54709 279 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 RPL23AP62750 156 aaKnown RBP11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 GNGT1P63211 74 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 DGCR2P98153 550 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 KPNB1Q14974 876 aaKnown RBP11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 TPTE2P1Q5T6R2 138 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 PRAMEF5Q5TYX0 476 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 NXNL2Q5VZ03 156 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 ETV3LQ6ZN32 361 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 RNF144BQ7Z419 303 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 COMMD1Q8N668 190 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 YIPF7Q8N8F6 280 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 OR4D6Q8NGJ1 314 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 BCAS4Q8TDM0 211 aa11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 CCDC124Q96CT7 223 aaKnown RBP11.74□□□□□ -0.53
CCDC88B-201ENST00000301897 BUB1B-PAK6H3BSN5 160 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 RAMP3O60896 148 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 ENTPD6O75354 484 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 INMTO95050 263 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 RPP14O95059 124 aaKnown RBP11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 FAM107AO95990 144 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 T-ENOLP0DO92 83 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 PRKACAP17612 351 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 CALB2P22676 271 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 MYCNOSP40205 109 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 OR3A1P47881 315 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 HLA-DRB5Q30154 266 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 C10orf99Q6UWK7 81 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 PLEKHG7Q6ZR37 379 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 CATSPERDQ86XM0 798 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 THNSL2Q86YJ6 484 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 GID4Q8IVV7 300 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 NRBF2Q96F24 287 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 ADGRL4Q9HBW9 690 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 EXOSC4Q9NPD3 245 aaKnown RBP11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 RBFOX1Q9NWB1 397 aaKnown RBP11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 U3KQK5 164 aa11.73□□□□□ -0.53
CCDC88B-201ENST00000301897 NUDT19A8MXV4 375 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 MAGEB4O15481 346 aaPredicted RBP11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 PRKYO43930 277 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 ZFPL1O95159 310 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 UBCP0CG48 685 aaKnown RBP11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 PRKACBP22694 351 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 PTGFRP43088 359 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 OR3A4PP47883 348 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 SLC35B1P78383 322 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 PTGES3Q15185 160 aaKnown RBP11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 ODF4Q2M2E3 257 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 KLHL22Q53GT1 634 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 OR2W3Q7Z3T1 314 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 RHOFQ9HBH0 211 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 IL36RNQ9UBH0 155 aa11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 AMMECR1Q9Y4X0 333 aaPredicted RBP11.72□□□□□ -0.53
CCDC88B-201ENST00000301897 A0A087X0M5 115 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 A0A1B0GX30 115 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 METTL15A6NJ78 407 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 LY6LH3BQJ8 138 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 DYNC1I1O14576 645 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 SULT1C4O75897 302 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 CSN2P05814 226 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 BCL3P20749 454 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 DUSP1P28562 367 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 NPBWR2P48146 333 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 POU3F4P49335 361 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 MTCP1P56278 107 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 EFNB1P98172 346 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 AADACL4Q5VUY2 407 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 LHFPL2Q6ZUX7 228 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 CHST4Q8NCG5 386 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 TMEM163Q8TC26 289 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 RPEQ96AT9 228 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 P2RX4Q99571 388 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 ZNF286AQ9HBT8 521 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 HMG20AQ9NP66 347 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 KRT84Q9NSB2 600 aa11.71□□□□□ -0.53
CCDC88B-201ENST00000301897 LOC107986453A0A1B0GWG9 222 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 ODAMA1E959 279 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A18PA6NE21 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A16PA6NEW6 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A20PA6NIJ5 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 SH2D7A6NKC9 451 aaPredicted RBP11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 ZNF729A6NN14 1252 aaPredicted RBP11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A9PA6NNJ1 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A12PA8MX19 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A5PA8MXJ8 464 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 H0YHG0 523 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 C3orf84H3BNL1 204 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 SIRPB1O00241 398 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FGF16O43320 207 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 OR2H2O95918 312 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 CCDC159P0C7I6 412 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 OR2T7P0C7T2 308 aa11.7□□□□□ -0.54
CCDC88B-201ENST00000301897 FAM90A15PP0C7V4 464 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms