RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 RPUSD3Q6P087 351 aaKnown RBP16.29■□□□□ 0.2
PCDH1-201ENST00000287008 OR4S2Q8NH73 311 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 TMPRSS13Q9BYE2 586 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 CACNA1BQ00975 2339 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 OGG1O15527 345 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 METTL15P1P0C7V9 234 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 XAF1Q6GPH4 301 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 RAB40CQ96S21 281 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 GPR27Q9NS67 375 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 TSPAN2O60636 221 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 HAND1O96004 215 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 SPICQ8N5J4 248 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 UPK3AO75631 287 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 GPR6P46095 362 aaPredicted RBP16.29■□□□□ 0.2
PCDH1-201ENST00000287008 C10orf111Q8N326 155 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 LRFN3Q9BTN0 628 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 OCEL1Q9H607 264 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 AAMDCQ9H7C9 122 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 FRRS1LQ9P0K9 344 aa16.29■□□□□ 0.2
PCDH1-201ENST00000287008 COL6A6A6NMZ7 2263 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 UBE2L5PA0A1B0GUS4 154 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 CHEK1O14757 476 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 IGKV1D-16P01601 117 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 C1orf174Q8IYL3 243 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 LRRC37AA6NMS7 1700 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 CENPVL1A0A0U1RR11 272 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 TO15178 435 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 PCMT1P22061 227 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 BATFQ16520 125 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 FAM27BQ5VT28 67 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 TMEM147Q9BVK8 224 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 TDRD15B5MCY1 1934 aaKnown RBP16.28■□□□□ 0.2
PCDH1-201ENST00000287008 PRF1P14222 555 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 PAX6P26367 422 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 ASCL5Q7RTU5 278 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 CHRDL1Q9BU40 450 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 OR2J1Q9GZK6 312 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 TAF1LQ8IZX4 1826 aa16.28■□□□□ 0.2
PCDH1-201ENST00000287008 ZNFX1Q9P2E3 1918 aaKnown RBP16.28■□□□□ 0.2
PCDH1-201ENST00000287008 S100A4P26447 101 aaKnown RBP16.27■□□□□ 0.2
PCDH1-201ENST00000287008 ASCL1P50553 236 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 MPV17LQ2QL34 196 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 SMIM7Q9BQ49 75 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 SLC7A10Q9NS82 523 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF629Q9UEG4 869 aaPredicted RBP16.27■□□□□ 0.2
PCDH1-201ENST00000287008 CKAP5Q14008 2032 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 PDGFAP04085 211 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF883P0CG24 379 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 CBR1P16152 277 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 TMEM65Q6PI78 240 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 GRAMD2BQ96HH9 432 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 SLC25A32Q9H2D1 315 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 CA10Q9NS85 328 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 CACNG5Q9UF02 275 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 MYOFQ9NZM1 2061 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 ATRXP46100 2492 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 CA11O75493 328 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 COX6B1P14854 86 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 ZNF90Q03938 601 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 ETV3LQ6ZN32 361 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 C20orf24Q9BUV8 137 aa16.27■□□□□ 0.2
PCDH1-201ENST00000287008 C3orf85A0A1B0GTC6 90 aa16.27■□□□□ 0.19
PCDH1-201ENST00000287008 PRSS44E7EML9 344 aa16.27■□□□□ 0.19
PCDH1-201ENST00000287008 GZMKP49863 264 aa16.27■□□□□ 0.19
PCDH1-201ENST00000287008 OR5I1Q13606 314 aa16.27■□□□□ 0.19
PCDH1-201ENST00000287008 GLDNQ6ZMI3 551 aaPredicted RBP16.27■□□□□ 0.19
PCDH1-201ENST00000287008 WDFY2Q96P53 400 aa16.27■□□□□ 0.19
PCDH1-201ENST00000287008 OOEPA6NGQ2 149 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 CNN1P51911 297 aaKnown RBP16.26■□□□□ 0.19
PCDH1-201ENST00000287008 TGIF2LYQ8IUE0 185 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 TGIF2LXQ8IUE1 241 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 NAA60Q9H7X0 242 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 ANXA10Q9UJ72 324 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 CTRB1P17538 263 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 DHRS2Q13268 280 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 CTRB2Q6GPI1 263 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 PECRQ9BY49 303 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 UMAD1C9J7I0 102 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 BTNL8Q6UX41 500 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 SKA3Q8IX90 412 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 LSM11P83369 360 aaKnown RBP eCLIP16.26■□□□□ 0.19
PCDH1-201ENST00000287008 ZP4Q12836 540 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 PHYHD1Q5SRE7 291 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 TNFRSF19Q9NS68 423 aa16.26■□□□□ 0.19
PCDH1-201ENST00000287008 LRRC3CA6NJW4 275 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 DXOO77932 396 aaKnown RBP16.25■□□□□ 0.19
PCDH1-201ENST00000287008 IGHA1P01876 353 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 CCL8P80075 99 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 PRR27Q6MZM9 219 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 RXFP4Q8TDU9 374 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 SCARF2Q96GP6 870 aaPredicted RBP16.25■□□□□ 0.19
PCDH1-201ENST00000287008 RAB18Q9NP72 206 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 TMEM210A6NLX4 147 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 GEMIN2O14893 280 aaKnown RBP16.25■□□□□ 0.19
PCDH1-201ENST00000287008 LGALS7P47929 136 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 ADAM5Q6NVV9 412 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 ESPL1Q14674 2120 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 SFT2D2O95562 160 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 PPP1R1AQ13522 171 aa16.25■□□□□ 0.19
PCDH1-201ENST00000287008 ZNF239Q16600 458 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms