RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 TGIF2-C20orf24A0A0A6YYL0 155 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 A0A0B4J293 547 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 ZFP92A6NM28 416 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 C16orf97H3BN30 126 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 RAB29O14966 203 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 VWA1Q6PCB0 445 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 MUC20Q8N307 709 aaPredicted RBP11.31□□□□□ -0.6
USP40-201ENST00000251722 TMEM171Q8WVE6 324 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 OPN4Q9UHM6 478 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 FITM1A5D6W6 292 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 LIPT2A6NK58 231 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 AHRRA9YTQ3 701 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 NGFP01138 241 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 TMEM37Q8WXS4 190 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 DVL3Q92997 716 aaPredicted RBP11.31□□□□□ -0.6
USP40-201ENST00000251722 RNF167Q9H6Y7 350 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 KCNMB2Q9Y691 235 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 MYO9BQ13459 2157 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 DVL1O14640 695 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 OR8G2PQ6IF36 304 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 CITED1Q99966 193 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 NDUFAF3Q9BU61 184 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 TEX50A0A1B0GTY4 177 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 A0A1W2PN81 502 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 PGA3P0DJD8 388 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 FAHP16930 419 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 FPR2P25090 351 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 CHRNA7P36544 502 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 TNFRSF9Q07011 255 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 TMEM268Q5VZI3 342 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 GLCCI1Q86VQ1 547 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 OR2T6Q8NHC8 308 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 IL22RA2Q969J5 263 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 STARD4Q96DR4 205 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 ARSGQ96EG1 525 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 FBXO34Q9NWN3 711 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 UQCR10Q9UDW1 63 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 PILRBQ9UKJ0 227 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 OR2M5A3KFT3 312 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 P2RY6Q15077 328 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 GAB4Q2WGN9 574 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 DHRS7BQ6IAN0 325 aaPredicted RBP11.31□□□□□ -0.6
USP40-201ENST00000251722 DHRS11Q6UWP2 260 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 LYG2Q86SG7 212 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 SLC25A40Q8TBP6 338 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 TSPAN32Q96QS1 320 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 SMIM7Q9BQ49 75 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 IKZF5Q9H5V7 419 aa11.31□□□□□ -0.6
USP40-201ENST00000251722 FGF9P31371 208 aaPredicted RBP11.3□□□□□ -0.6
USP40-201ENST00000251722 GABRA6Q16445 453 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 TMEM182Q6ZP80 229 aaPredicted RBP11.3□□□□□ -0.6
USP40-201ENST00000251722 NTMQ9P121 344 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 ZDHHC8Q9ULC8 765 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 CELA2BP08218 269 aaPredicted RBP11.3□□□□□ -0.6
USP40-201ENST00000251722 LIFP15018 202 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 LRRC29Q8WV35 223 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 ADGRG7Q96K78 797 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 RNF2Q99496 336 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 TMPRSS13Q9BYE2 586 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 FOXD3Q9UJU5 478 aaPredicted RBP11.3□□□□□ -0.6
USP40-201ENST00000251722 SPAARA0A1B0GVQ0 90 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 CST4P01036 141 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 DGCR2P98153 550 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 OR10A7Q8NGE5 316 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 MBD3L1Q8WWY6 194 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 PIK3IP1Q96FE7 263 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 Q9N2K0 584 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 NAGKQ9UJ70 344 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 ICAM5Q9UMF0 924 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 HSBP1O75506 76 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 COX6B1P14854 86 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 ZFP36L2P47974 494 aaKnown RBP11.3□□□□□ -0.6
USP40-201ENST00000251722 SLC37A1P57057 533 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 PCBP3P57721 371 aaKnown RBP11.3□□□□□ -0.6
USP40-201ENST00000251722 PAFAH1B2P68402 229 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 SRSF5Q13243 272 aaKnown RBP11.3□□□□□ -0.6
USP40-201ENST00000251722 ST3GAL2Q16842 350 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 CTDSP1Q9GZU7 261 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 SEBOXQ9HB31 216 aaPredicted RBP11.3□□□□□ -0.6
USP40-201ENST00000251722 FAM60AQ9NP50 221 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 PSENENQ9NZ42 101 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 KCNE3Q9Y6H6 103 aa11.3□□□□□ -0.6
USP40-201ENST00000251722 PLPP2O43688 288 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 ATG4DQ86TL0 474 aaPredicted RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 HGDQ93099 445 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 TBX15Q96SF7 602 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 NUMA1Q14980 2115 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 ZC3H12DA2A288 527 aaKnown RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 AGFG2O95081 481 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 CCL4P13236 92 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 COMPP49747 757 aaPredicted RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 TMEM217Q8N7C4 229 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 NHLRC2Q8NBF2 726 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 SUMF1Q8NBK3 374 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 NECAP1Q8NC96 275 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 RTN4IP1Q8WWV3 396 aaPredicted RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 NTNG2Q96CW9 530 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 CHRNA10Q9GZZ6 450 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 TIMM9Q9Y5J7 89 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 RPL12P30050 165 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms