RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 GNG2P59768 71 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 C11orf91Q3C1V1 193 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 ATAD3CQ5T2N8 411 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 OR52W1Q6IF63 320 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 MOGAT3Q86VF5 341 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 MAFIPQ8WZ33 124 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 COX4I2Q96KJ9 171 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 HRASLSQ9HDD0 168 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 PCDHB16Q9NRJ7 776 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 POLDIP2Q9Y2S7 368 aa16.99■□□□□ 0.31
CLN3-250ENST00000636839 CHD6Q8TD26 2715 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 UBE2QL1A1L167 161 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 FAM221AA4D161 298 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 HLA-DMAP28067 261 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 CCL8P80075 99 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 ARFRP1Q13795 201 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 FAM189A2Q15884 450 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 CELF2-AS1Q8N7Q2 184 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 SCPEP1Q9HB40 452 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 AK3Q9UIJ7 227 aa16.98■□□□□ 0.31
CLN3-250ENST00000636839 SPTAN1Q13813 2472 aaKnown RBP16.98■□□□□ 0.31
CLN3-250ENST00000636839 NXPH2O95156 264 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 CD3DP04234 171 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 CEBPDP49716 269 aaPredicted RBP16.97■□□□□ 0.31
CLN3-250ENST00000636839 CCR6P51684 374 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 IKZF1Q13422 519 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 BPIFB2Q8N4F0 458 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 FBXW5Q969U6 566 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 NLKQ9UBE8 527 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 SULT1C2O00338 296 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 EGR1P18146 543 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 TNFAIP6P98066 277 aaPredicted RBP16.97■□□□□ 0.31
CLN3-250ENST00000636839 LRRC29Q8WV35 223 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 TMEM204Q9BSN7 226 aa16.97■□□□□ 0.31
CLN3-250ENST00000636839 A0A1W2PPR1 153 aa16.96■□□□□ 0.31
CLN3-250ENST00000636839 HS3ST1O14792 307 aa16.96■□□□□ 0.31
CLN3-250ENST00000636839 PDCD6O75340 191 aa16.96■□□□□ 0.31
CLN3-250ENST00000636839 PTBP3O95758 552 aaKnown RBP16.96■□□□□ 0.31
CLN3-250ENST00000636839 APOBEC3AP31941 199 aaPredicted RBP16.96■□□□□ 0.31
CLN3-250ENST00000636839 ZNF672Q499Z4 452 aaPredicted RBP16.96■□□□□ 0.31
CLN3-250ENST00000636839 NHLRC3Q5JS37 347 aa16.96■□□□□ 0.31
CLN3-250ENST00000636839 BOLLQ8N9W6 283 aaKnown RBP16.96■□□□□ 0.31
CLN3-250ENST00000636839 POC1AQ8NBT0 407 aa16.96■□□□□ 0.31
CLN3-250ENST00000636839 M0QYG6 137 aa16.96■□□□□ 0.3
CLN3-250ENST00000636839 FUT3P21217 361 aa16.96■□□□□ 0.3
CLN3-250ENST00000636839 GIFP27352 417 aa16.96■□□□□ 0.3
CLN3-250ENST00000636839 FAM201AQ5SY85 155 aa16.96■□□□□ 0.3
CLN3-250ENST00000636839 ST6GALNAC5Q9BVH7 336 aa16.96■□□□□ 0.3
CLN3-250ENST00000636839 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.96■□□□□ 0.3
CLN3-250ENST00000636839 DCAF16Q9NXF7 216 aa16.96■□□□□ 0.3
CLN3-250ENST00000636839 HSF4Q9ULV5 492 aa16.96■□□□□ 0.3
CLN3-250ENST00000636839 FAM240BA0A1B0GVZ2 78 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 C17orf100A8MU93 164 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 PNLIPRP3Q17RR3 467 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 MZT2BQ6NZ67 158 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 Q6ZPA2 131 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 OR5T2Q8NGG2 359 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 OR4C16Q8NGL9 310 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 RDH5Q92781 318 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 SNAPC3Q92966 411 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 HES4Q9HCC6 221 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 GCM1Q9NP62 436 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 MCUBQ9NWR8 336 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 ZDHHC8Q9ULC8 765 aa16.95■□□□□ 0.3
CLN3-250ENST00000636839 IGKV1D-8A0A087WSZ0 117 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 TRAV24A0A0B4J272 114 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 M0R233 179 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 NOS1APO75052 506 aaPredicted RBP16.94■□□□□ 0.3
CLN3-250ENST00000636839 ZNF205O95201 554 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 GSTT2BP0CG30 244 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 SLC6A1P30531 599 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 SRSF1Q07955 248 aaKnown RBP eCLIP16.94■□□□□ 0.3
CLN3-250ENST00000636839 DYRK1AQ13627 763 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 Q6P435 159 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 ENKURQ8TC29 256 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 TINAGL1Q9GZM7 467 aaPredicted RBP16.94■□□□□ 0.3
CLN3-250ENST00000636839 OR14J1Q9UGF5 321 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 SERPINE3A8MV23 424 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.94■□□□□ 0.3
CLN3-250ENST00000636839 ECDO95905 644 aaPredicted RBP16.94■□□□□ 0.3
CLN3-250ENST00000636839 GLRA1P23415 457 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 MZT1Q08AG7 82 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 PLA1AQ53H76 456 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 SUMF2Q8NBJ7 301 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 OR56B4Q8NH76 319 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 IFT46Q9NQC8 304 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 IL19Q9UHD0 177 aa16.94■□□□□ 0.3
CLN3-250ENST00000636839 DCHS2Q6V1P9 2916 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 VSTM5A8MXK1 200 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 SIRPB1O00241 398 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 CSN2P05814 226 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 CSF1P09603 554 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 IGFBP2P18065 325 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 ACTBP60709 375 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 ACTG1P63261 375 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 ACP7Q6ZNF0 438 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 C5orf24Q7Z6I8 188 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 GCSAMQ8N6F7 178 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 DHRS9Q9BPW9 319 aa16.93■□□□□ 0.3
CLN3-250ENST00000636839 ING3Q9NXR8 418 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms