RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 HAND1O96004 215 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 RBP4P02753 201 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 IGLL1P15814 213 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 POLR2IP36954 125 aaKnown RBP12.96□□□□□ -0.33
CLN3-246ENST00000636228 LOXL3P58215 753 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 MEF2CQ06413 473 aaPredicted RBP12.96□□□□□ -0.33
CLN3-246ENST00000636228 DNAL1Q4LDG9 190 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 REC114Q7Z4M0 266 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 GID4Q8IVV7 300 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 PRSS35Q8N3Z0 413 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 OR10H4Q8NGA5 316 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 OR4F17Q8NGA8 305 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 BORCS8Q96FH0 119 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 OR4F4Q96R69 305 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 OCSTAMPQ9BR26 566 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 ADI1Q9BV57 179 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 SESN1Q9Y6P5 492 aa12.96□□□□□ -0.33
CLN3-246ENST00000636228 G3V2T6 193 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 BCL3P20749 454 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 PEX2P28328 305 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 POU3F4P49335 361 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 DYNLT3P51808 116 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 FOXB2Q5VYV0 432 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 OR5AU1Q8NGC0 362 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 CHST5Q9GZS9 411 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 TMEM133Q9H2Q1 129 aa12.95□□□□□ -0.34
CLN3-246ENST00000636228 PLXNB1O43157 2135 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 IGKV1-9A0A0C4DH69 117 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 LOC107986453A0A1B0GWG9 222 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 FAM172BPA6NC97 362 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 SH2D7A6NKC9 451 aaPredicted RBP12.94□□□□□ -0.34
CLN3-246ENST00000636228 SIRPB1O00241 398 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 GATBO75879 557 aaKnown RBP12.94□□□□□ -0.34
CLN3-246ENST00000636228 DNAJC8O75937 253 aaPredicted RBP12.94□□□□□ -0.34
CLN3-246ENST00000636228 OR2T7P0C7T2 308 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 PRKACAP17612 351 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 KIR3DL2P43630 455 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 ZNF91Q05481 1191 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 TP53I3Q53FA7 332 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 MINOS1Q5TGZ0 78 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 PRAMEF5Q5TYX0 476 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 KDM4DQ6B0I6 523 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 AMIGO2Q86SJ2 522 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 OR4P4Q8NGL7 312 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 ADAT3Q96EY9 351 aaPredicted RBP12.94□□□□□ -0.34
CLN3-246ENST00000636228 CLEC7AQ9BXN2 247 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 WARS2Q9UGM6 360 aaKnown RBP12.94□□□□□ -0.34
CLN3-246ENST00000636228 LINC00312Q9Y6C7 94 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 MINOS1-NBL1R4GNA1 71 aa12.94□□□□□ -0.34
CLN3-246ENST00000636228 FAM90A22PA8MWA6 464 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 SERPINA3P01011 423 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 CD33P20138 364 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 HTR1FP30939 366 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 ATP6V1E1P36543 226 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 OR3A1P47881 315 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 ATP1B3P54709 279 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 MTCP1P56278 107 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 CD83Q01151 205 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 ATP6AP1Q15904 470 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 TCTEX1D4Q5JR98 221 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 CCDC121Q6ZUS5 278 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 RNF144BQ7Z419 303 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 TRAPPC6BQ86SZ2 158 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 FAM58AQ8N1B3 248 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 ABHD12Q8N2K0 398 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 RNF166Q96A37 237 aaPredicted RBP12.93□□□□□ -0.34
CLN3-246ENST00000636228 RFT1Q96AA3 541 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 ING3Q9NXR8 418 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 GNG8Q9UK08 70 aa12.93□□□□□ -0.34
CLN3-246ENST00000636228 ENTPD6O75354 484 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 MPIG6BO95866 241 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 LPLP06858 475 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 HTR1DP28221 377 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 GDNFP39905 211 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 RBP2P50120 134 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 P2RX3P56373 397 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 ZNF85Q03923 595 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 C10orf99Q6UWK7 81 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 CENPVQ7Z7K6 275 aaPredicted RBP12.92□□□□□ -0.34
CLN3-246ENST00000636228 STMN2Q93045 179 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 FGGYQ96C11 551 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 CIB1Q99828 191 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 GSTK1Q9Y2Q3 226 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 ZNF281Q9Y2X9 895 aa12.92□□□□□ -0.34
CLN3-246ENST00000636228 IGKV1-12A0A0C4DH73 117 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 TCRBV4S1A1TA0A5B7 111 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 MGST3O14880 152 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 SULT1C4O75897 302 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 IGKV1D-12P01611 117 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 PF4V1P10720 104 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 ATF1P18846 271 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 CDK2P24941 298 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 AZGP1P25311 298 aaKnown RBP12.91□□□□□ -0.34
CLN3-246ENST00000636228 GLIPR1P48060 266 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 SCN1BQ07699 218 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 AESQ08117 197 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 ZNF146Q15072 292 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 ABCA11PQ4W5N1 156 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 UTF1Q5T230 341 aa12.91□□□□□ -0.34
CLN3-246ENST00000636228 ZDHHC13Q8IUH4 622 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms