RNA–Protein interactions for RNA: ENST00000635988.1

CACNA1A-220, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 2,548 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-220ENST00000635988 C1orf189Q5VU69 101 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 FAM185AQ8N0U4 392 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 D2HGDHQ8N465 521 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 ZFP62Q8NB50 900 aaPredicted RBP12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 REEP6Q96HR9 211 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 C11orf1Q9H5F2 150 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 ZNF286AQ9HBT8 521 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 DCAF16Q9NXF7 216 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 PTRH2Q9Y3E5 179 aaKnown RBP12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 WSB1Q9Y6I7 421 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 CCDC187A0A096LP49 1063 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 ZNF732B4DXR9 585 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 SCAF4O95104 1147 aaKnown RBP12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 PTBP3O95758 552 aaKnown RBP12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 NKX2-1P43699 371 aaPredicted RBP12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 TAF9Q16594 264 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 SLC22A25Q6T423 547 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 DPPA3Q6W0C5 159 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 SLC35G3Q8N808 338 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 S100PBPQ96BU1 408 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 NKX2-4Q9H2Z4 354 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 B3GALT1Q9Y5Z6 326 aa12.89□□□□□ -0.35
CACNA1A-220ENST00000635988 LINC01565O15544 149 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 RGS19P49795 217 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 HERV-K104P61576 105 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 TLE4Q04727 773 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 HIST3H2BBQ8N257 126 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 OR10G4Q8NGN3 311 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 M1APQ8TC57 530 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 GTF3AQ92664 365 aaKnown RBP12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 C14orf144Q96I85 54 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 LIPGQ9Y5X9 500 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 IGHV3-20A0A0C4DH32 117 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 A0A1W2PNR3 127 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 FAM24AA6NFZ4 105 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 AQP7P3A6NL99 342 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 H0YL77 283 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 CYB5BO43169 146 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 OTX1P32242 354 aaPredicted RBP12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 ERVFRD-1P60508 538 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 PKIAP61925 76 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 ICAM4Q14773 271 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 HAGHQ16775 308 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 ATG2AQ2TAZ0 1938 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 KHDC3LQ587J8 217 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 SSX9Q7RTT3 188 aa12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 THAP3Q8WTV1 239 aaPredicted RBP12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 CPNE4Q96A23 557 aaPredicted RBP12.88□□□□□ -0.35
CACNA1A-220ENST00000635988 OR5H15A6NDH6 313 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 OR5H1A6NKK0 313 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 CDRT15L2A8MXV6 281 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 TRDCB7Z8K6 153 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 TSTD3H0UI37 97 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 CEBPGP53567 150 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 VAMP2P63027 116 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 HIST1H3AP68431 136 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 CHAF1BQ13112 559 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 CNN3Q15417 329 aaKnown RBP12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 OR8B8Q15620 311 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 SP5Q6BEB4 398 aaPredicted RBP12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 ZNF343Q6P1L6 599 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 SPNS3Q6ZMD2 512 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 REC114Q7Z4M0 266 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 SPTSSAQ969W0 71 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 TGIF2Q9GZN2 237 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 LYRM2Q9NU23 88 aaPredicted RBP12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 SLCO1B1Q9Y6L6 691 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 ARID1AO14497 2285 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 IGSF23A1L1A6 192 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 ZNF724A8MTY0 619 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 ZNF814B7Z6K7 855 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 M0R135 149 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 MMP9P14780 707 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 PNLIPP16233 465 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 BAXQ07812 192 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 C10orf128Q5T292 105 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 AKR1C8PQ5T2L2 129 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 PLXDC1Q8IUK5 500 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 TMEM252Q8N6L7 170 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 CYB561D1Q8N8Q1 229 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 NFAM1Q8NET5 270 aaPredicted RBP12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 OR5L2Q8NGL0 311 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 ZNF799Q96GE5 643 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 METTL7AQ9H8H3 244 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 TMEM242Q9NWH2 141 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 URGCP-MRPS24S4R325 110 aa12.87□□□□□ -0.35
CACNA1A-220ENST00000635988 TGIF2-C20orf24A0A0A6YYL0 155 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 C3orf85A0A1B0GTC6 90 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 LY86O95711 162 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 DBHP09172 617 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 CEACAM1P13688 526 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 SELLP14151 372 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 FOLR1P15328 257 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 KLK2P20151 261 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 ASCL1P50553 236 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 CLDN17P56750 224 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 HLA-DRB3P79483 266 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 PNRC1Q12796 327 aaPredicted RBP12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 ASCL4Q6XD76 172 aa12.86□□□□□ -0.35
CACNA1A-220ENST00000635988 FOXL2NBQ6ZUU3 175 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms