RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CAV3P56539 151 aa15.48■□□□□ 0.07
CDX1-202ENST00000616154 WNT4P56705 351 aa15.48■□□□□ 0.07
CDX1-202ENST00000616154 MRPL28Q13084 256 aaKnown RBP15.48■□□□□ 0.07
CDX1-202ENST00000616154 TP53I3Q53FA7 332 aa15.48■□□□□ 0.07
CDX1-202ENST00000616154 HAGHLQ6PII5 290 aaPredicted RBP15.48■□□□□ 0.07
CDX1-202ENST00000616154 ZNF573Q86YE8 665 aa15.48■□□□□ 0.07
CDX1-202ENST00000616154 PRSS35Q8N3Z0 413 aa15.48■□□□□ 0.07
CDX1-202ENST00000616154 POC1AQ8NBT0 407 aa15.48■□□□□ 0.07
CDX1-202ENST00000616154 C10orf35Q96D05 121 aa15.48■□□□□ 0.07
CDX1-202ENST00000616154 METTL8Q9H825 291 aaKnown RBP15.48■□□□□ 0.07
CDX1-202ENST00000616154 IGKV1D-17A0A075B6S4 117 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 MEIOCA2RUB1 952 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 TFF1P04155 84 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 RPSAP08865 295 aaKnown RBP15.47■□□□□ 0.07
CDX1-202ENST00000616154 PGA5P0DJD9 388 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 JUNBP17275 347 aaPredicted RBP15.47■□□□□ 0.07
CDX1-202ENST00000616154 GLRA1P23415 457 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 MAP2K4P45985 399 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 BDH1Q02338 343 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 SPHARQ15513 63 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 C2orf68Q2NKX9 166 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 PNKDQ8N490 385 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 FCGR1BQ92637 280 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 SDSLQ96GA7 329 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 OR5M11Q96RB7 305 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 ISYNA1Q9NPH2 558 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 BABAM2Q9NXR7 383 aa15.47■□□□□ 0.07
CDX1-202ENST00000616154 A0A1W2PQ09 198 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 ANKRD61A6NGH8 418 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 J3QLW9 94 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 SYT7O43581 403 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 LALBAP00709 142 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 UBCP0CG48 685 aaKnown RBP15.46■□□□□ 0.07
CDX1-202ENST00000616154 PSG2P11465 335 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 ZNF19P17023 458 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 NDUFB7P17568 137 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 KIR3DL2P43630 455 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 DMRTC1Q5HYR2 192 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 ZNF367Q7RTV3 350 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 FAM220AQ7Z4H9 259 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 BEND2Q8NDZ0 799 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 NRIP2Q9BQI9 281 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 MRPS26Q9BYN8 205 aaKnown RBP15.46■□□□□ 0.07
CDX1-202ENST00000616154 PKIBQ9C010 78 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 CHST5Q9GZS9 411 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 HES4Q9HCC6 221 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 GPR173Q9NS66 373 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 GNG8Q9UK08 70 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 POLDIP2Q9Y2S7 368 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 MAB21L2Q9Y586 359 aa15.46■□□□□ 0.07
CDX1-202ENST00000616154 E9PI62 339 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 OGG1O15527 345 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 ISG15P05161 165 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 HAAOP46952 286 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 CCR9P51686 369 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 ERVK11-1P61568 191 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 BLMHQ13867 455 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 CCDC58Q4VC31 144 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 ACP7Q6ZNF0 438 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 OR2G2Q8NGZ5 317 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 FBLN5Q9UBX5 448 aa15.45■□□□□ 0.06
CDX1-202ENST00000616154 TRBV23-1A0A0A0MS06 115 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 LOC107986453A0A1B0GWG9 222 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 SYNGR1O43759 233 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 GABRA2P47869 451 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 IL24Q13007 206 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 MLLT11Q13015 90 aaPredicted RBP15.44■□□□□ 0.06
CDX1-202ENST00000616154 UBE2V2Q15819 145 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 SMIM21Q3B7S5 101 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 SYT6Q5T7P8 510 aaPredicted RBP15.44■□□□□ 0.06
CDX1-202ENST00000616154 SLC35E4Q6ICL7 350 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 HCP5Q6MZN7 132 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 FAM110DQ8TAY7 271 aaPredicted RBP15.44■□□□□ 0.06
CDX1-202ENST00000616154 PP6455Q8WZ26 134 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 MUL1Q969V5 352 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 PPA2Q9H2U2 334 aa15.44■□□□□ 0.06
CDX1-202ENST00000616154 SF3B6Q9Y3B4 125 aaKnown RBP15.44■□□□□ 0.06
CDX1-202ENST00000616154 H3BUX3 64 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 GATBO75879 557 aaKnown RBP15.43■□□□□ 0.06
CDX1-202ENST00000616154 TFAP2AP05549 437 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 CD1AP06126 327 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 GABRA5P31644 462 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 GBX2P52951 348 aaPredicted RBP15.43■□□□□ 0.06
CDX1-202ENST00000616154 TAS2R43P59537 309 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 NANOS3P60323 173 aaKnown RBP15.43■□□□□ 0.06
CDX1-202ENST00000616154 TPBGQ13641 420 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 TMEM244Q5VVB8 128 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 DMKNQ6E0U4 476 aaPredicted RBP15.43■□□□□ 0.06
CDX1-202ENST00000616154 CALHM1Q8IU99 346 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 OR5D13Q8NGL4 314 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 MGLLQ99685 303 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 PLEKHA1Q9HB21 404 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 ELL3Q9HB65 397 aaPredicted RBP15.43■□□□□ 0.06
CDX1-202ENST00000616154 FRRS1LQ9P0K9 344 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 SIRT4Q9Y6E7 314 aaPredicted RBP15.43■□□□□ 0.06
CDX1-202ENST00000616154 A6NIN4 97 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 CSF1P09603 554 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 ALDH3B2P48448 385 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 GPR50Q13585 617 aa15.43■□□□□ 0.06
CDX1-202ENST00000616154 CDK5R1Q15078 307 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms