RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 COLCA2A8K830 154 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 ZNF587BE7ETH6 402 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 PHOX2AO14813 284 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 EIF1BO60739 113 aaKnown RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 FAM3AP98173 230 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 LIAT1Q6ZQX7 453 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 MYO7BQ6PIF6 2116 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 A0A1W2PPE3 182 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 H3BQ15 152 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 HMGB3O15347 200 aaKnown RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 PIAS2O75928 621 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 HBE1P02100 147 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 FBP1P09467 338 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 AADACP22760 399 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 ZP4Q12836 540 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 COL13A1Q5TAT6 717 aaPredicted RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 OR8G2PQ6IF36 304 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 UBAC2Q8NBM4 344 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 BSCL2Q96G97 398 aaPredicted RBP11.03□□□□□ -0.64
LIG1-221ENST00000613670 OSGIN2Q9Y236 505 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 HDGFL3Q9Y3E1 203 aa11.03□□□□□ -0.64
LIG1-221ENST00000613670 LOC390937A0A1W2PQ73 354 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 TRAPPC2LH3BP13 241 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 IFNA1P01562 189 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 CLPSP04118 112 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 SEC11BP0C7V7 166 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 PGA4P0DJD7 388 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 PGA3P0DJD8 388 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 CSRP1P21291 193 aaKnown RBP11.02□□□□□ -0.65
LIG1-221ENST00000613670 ATP6V0CP27449 155 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 P2RY1P47900 373 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 NOVA1P51513 510 aaKnown RBP11.02□□□□□ -0.65
LIG1-221ENST00000613670 CARD18P57730 90 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 EWSR1Q01844 656 aaKnown RBP eCLIP11.02□□□□□ -0.65
LIG1-221ENST00000613670 IL22RA1Q8N6P7 574 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 SLC35G3Q8N808 338 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 PSMF1Q92530 271 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 A0A096LPE4 126 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 IGHV1OR15-9A0A0B4J2B8 117 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 LOC102725191A0A1B0GVB3 256 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 A0A1W2PPZ6 126 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 WIPF3A6NGB9 483 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 H0YL77 283 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 CXCL13O43927 109 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 GLB1P16278 677 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 SNCAP37840 140 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 SRPXP78539 464 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 FRZBQ92765 325 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 CABLES2Q9BTV7 478 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 CACFD1Q9UGQ2 172 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 LINC01387J3KSC0 135 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 GAPDHP04406 335 aaKnown RBP11.02□□□□□ -0.65
LIG1-221ENST00000613670 FGF8P55075 233 aaPredicted RBP11.02□□□□□ -0.65
LIG1-221ENST00000613670 PLP2Q04941 152 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 ZNF343Q6P1L6 599 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 ZNF709Q8N972 641 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 MRGPRFQ96AM1 343 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 TVP23CQ96ET8 276 aa11.02□□□□□ -0.65
LIG1-221ENST00000613670 SHANK1Q9Y566 2161 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 CCDC187A0A096LP49 1063 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 IGKV1-9A0A0C4DH69 117 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 C3orf85A0A1B0GTC6 90 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 C5orf63A6NC05 138 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 EDN3P14138 238 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 ZNF32P17041 273 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 DLK1P80370 383 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 PLPPR5Q32ZL2 321 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 C1orf87Q8N0U7 546 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 ZNF383Q8NA42 475 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 HPSE2Q8WWQ2 592 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 RPUSD4Q96CM3 377 aaKnown RBP11.01□□□□□ -0.65
LIG1-221ENST00000613670 PLEKHF2Q9H8W4 249 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 OBSL1O75147 1896 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 TRAF3IP2O43734 574 aaPredicted RBP11.01□□□□□ -0.65
LIG1-221ENST00000613670 IFNA10P01566 189 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 ACKR3P25106 362 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 TMEM267Q0VDI3 215 aaPredicted RBP11.01□□□□□ -0.65
LIG1-221ENST00000613670 EXTL1Q92935 676 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 SSX3Q99909 188 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 CHST5Q9GZS9 411 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 TMEM100Q9NV29 134 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 TMED3Q9Y3Q3 217 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 ZDBF2Q9HCK1 2354 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 HAAOP46952 286 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 DYNLT3P51808 116 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 RPS16P62249 146 aaKnown RBP11.01□□□□□ -0.65
LIG1-221ENST00000613670 ZNF154Q13106 437 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 IL13RA2Q14627 380 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 MST1LQ2TV78 715 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 CEACAM16Q2WEN9 425 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 SPANXN5Q5MJ07 72 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 ACER2Q5QJU3 275 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 BTNL8Q6UX41 500 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 RAB39BQ96DA2 213 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 GNPNAT1Q96EK6 184 aaPredicted RBP11.01□□□□□ -0.65
LIG1-221ENST00000613670 RASL10BQ96S79 203 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 SLC39A9Q9NUM3 307 aa11.01□□□□□ -0.65
LIG1-221ENST00000613670 IGKV3D-11A0A0A0MRZ8 115 aa11□□□□□ -0.65
LIG1-221ENST00000613670 A0A1W2PR80 420 aa11□□□□□ -0.65
LIG1-221ENST00000613670 CLN5O75503 358 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms