RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 BLCAPP62952 87 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 BDH1Q02338 343 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 ROM1Q03395 351 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 COL10A1Q03692 680 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 ZNF273Q14593 569 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 RCN1Q15293 331 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 FAM98BQ52LJ0 330 aaKnown RBP5.04□□□□□ -1.6
CUX1-220ENST00000607092 OR2T5Q6IEZ7 315 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 C11orf87Q6NUJ2 197 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 CCBE1Q6UXH8 406 aaPredicted RBP5.04□□□□□ -1.6
CUX1-220ENST00000607092 RNF144BQ7Z419 303 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 AQP12AQ8IXF9 295 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 ZNF679Q8IYX0 411 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 OSR2Q8N2R0 312 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 RNF148Q8N7C7 305 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 LINC00482Q8N8I6 264 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 OR8D4Q8NGM9 314 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 OR2T29Q8NH02 315 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 OR4Q3Q8NH05 313 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 OR51E1Q8TCB6 317 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 DNAJC9Q8WXX5 260 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 C10orf35Q96D05 121 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 WDR89Q96FK6 387 aaPredicted RBP5.04□□□□□ -1.6
CUX1-220ENST00000607092 CEP19Q96LK0 163 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 RBM14Q96PK6 669 aaKnown RBP5.04□□□□□ -1.6
CUX1-220ENST00000607092 OR8B4Q96RC9 309 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 PBOV1Q9GZY1 135 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 PLEKHA1Q9HB21 404 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 NEK6Q9HC98 313 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 HES4Q9HCC6 221 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 GPR84Q9NQS5 396 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 INPP5EQ9NRR6 644 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 ARMC1Q9NVT9 282 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 VNN3Q9NY84 501 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 NKX1-2Q9UD57 310 aaPredicted RBP5.04□□□□□ -1.6
CUX1-220ENST00000607092 PFDN2Q9UHV9 154 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 UBE2J1Q9Y385 318 aaPredicted RBP5.04□□□□□ -1.6
CUX1-220ENST00000607092 SAMHD1Q9Y3Z3 626 aaKnown RBP5.04□□□□□ -1.6
CUX1-220ENST00000607092 HILPDAQ9Y5L2 63 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 U3KQK5 164 aa5.04□□□□□ -1.6
CUX1-220ENST00000607092 TRGV10A0A0A0MS01 117 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 WI2-2373I1.2A0A1W2PRP0 233 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 PQLC2LA1A4F0 135 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 FAM183AA6NL82 134 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 NUDT19A8MXV4 375 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 H0YJX3 145 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 PSMD9O00233 223 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 TOR1AO14656 332 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 MGST3O14880 152 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 CASQ2O14958 399 aaPredicted RBP5.03□□□□□ -1.6
CUX1-220ENST00000607092 ZNF737O75373 536 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 BAG2O95816 211 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 IGLV3-1P01715 115 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 PSKH1P11801 424 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 FUT6P51993 359 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 DLX6P56179 175 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 ERVK11-1P61568 191 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 ESRRGP62508 458 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 MS4A2Q01362 244 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 FLOT2Q14254 428 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 ABCA11PQ4W5N1 156 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 SPIN3Q5JUX0 258 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 BCL2L15Q5TBC7 163 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 TMEM42Q69YG0 159 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 TRAPPC6BQ86SZ2 158 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 DHFR2Q86XF0 187 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 THNSL2Q86YJ6 484 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 MRPL41Q8IXM3 137 aaKnown RBP5.03□□□□□ -1.6
CUX1-220ENST00000607092 Q8NFD4 153 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 OR10G2Q8NGC3 310 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 GIPC3Q8TF64 312 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 LYZL4Q96KX0 146 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 AMELYQ99218 206 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 SLC25A33Q9BSK2 321 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 ADI1Q9BV57 179 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 PPP1R3EQ9H7J1 279 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 RHOFQ9HBH0 211 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 FAM206AQ9NX38 181 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 TAS2R3Q9NYW6 316 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 IKZF2Q9UKS7 526 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 AMMECR1Q9Y4X0 333 aaPredicted RBP5.03□□□□□ -1.6
CUX1-220ENST00000607092 TENM2Q9NT68 2774 aa5.03□□□□□ -1.6
CUX1-220ENST00000607092 hCG_2014768A0A024R1R8 64 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 TCRBV3S1A0A5B6 114 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 LOC110117498-PIK3R3F6TDL0 507 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 GNGT2O14610 69 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 FGF16O43320 207 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 SELENOFO60613 162 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 TFF1P04155 84 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 LPLP06858 475 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 OSMP13725 252 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 GABRR1P24046 479 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 PAX6P26367 422 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 CD34P28906 385 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 THBS3P49746 956 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 ATP1B3P54709 279 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 P2RX3P56373 397 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 GINS1Q14691 196 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 GRK1Q15835 563 aa5.02□□□□□ -1.61
CUX1-220ENST00000607092 SNAPC1Q16533 368 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms