RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 PRKACAP17612 351 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 NPBWR2P48146 333 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 UBE2E1P51965 193 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 KLRD1Q13241 179 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 ZNF146Q15072 292 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 LAIR2Q6ISS4 152 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 LDLRAD3Q86YD5 345 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 OR8H2Q8N162 312 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 PIP4P2Q8N4L2 257 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 ZSCAN4Q8NAM6 433 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-206ENST00000595974 SSMEM1Q8WWF3 244 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 SNX22Q96L94 193 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 HMG20AQ9NP66 347 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 IL36RNQ9UBH0 155 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 CLEC2DQ9UHP7 191 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 GLS2Q9UI32 602 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 PSORS1C1Q9UIG5 152 aa13.28□□□□□ -0.28
TRIM28-206ENST00000595974 KIAA2026Q5HYC2 2103 aa13.27□□□□□ -0.28
TRIM28-206ENST00000595974 IGKV1-12A0A0C4DH73 117 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 hCG_1809904A0A1W2PP81 198 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 A0A1W2PPE2 198 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 A0A1W2PR64 198 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 A0A1W2PRV1 198 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 ERICH4A6NGS2 130 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 NPFFO15130 113 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 ANGPTL7O43827 346 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 XPNPEP2O43895 674 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 IGKV1D-12P01611 117 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 FBP1P09467 338 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 RAB3AP20336 220 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 SOX2P48431 317 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 DLX1P56177 255 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 TAS2R43P59537 309 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 ACSM1Q08AH1 577 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 FOXL1Q12952 345 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 KISS1Q15726 138 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 TMEM200BQ69YZ2 307 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 ZNF529Q6P280 563 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 C16orf87Q6PH81 154 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 CRIP3Q6Q6R5 217 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 AHSA2Q719I0 299 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 GDPD3Q7L5L3 318 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 ZNF485Q8NCK3 441 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 OR4M1Q8NGD0 313 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 OR5D18Q8NGL1 313 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 ZNF281Q9Y2X9 895 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 FAM96BQ9Y3D0 163 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 PCDHGB5Q9Y5G0 923 aa13.27□□□□□ -0.29
TRIM28-206ENST00000595974 MAGEB3O15480 346 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 LALBAP00709 142 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 EDDM3BP56851 147 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 ZP1P60852 638 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 ZNF273Q14593 569 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 AWAT1Q58HT5 328 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 DMKNQ6E0U4 476 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-206ENST00000595974 C17orf107Q6ZR85 190 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 RNF144BQ7Z419 303 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 STX19Q8N4C7 294 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 BPIFB6Q8NFQ5 453 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 TMEM106AQ96A25 262 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 EXOSC4Q9NPD3 245 aaKnown RBP13.26□□□□□ -0.29
TRIM28-206ENST00000595974 TAS2R4Q9NYW5 299 aa13.26□□□□□ -0.29
TRIM28-206ENST00000595974 SF3B6Q9Y3B4 125 aaKnown RBP13.26□□□□□ -0.29
TRIM28-206ENST00000595974 SIRT4Q9Y6E7 314 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-206ENST00000595974 TMEM82A0PJX8 343 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 HAX1O00165 279 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 MYL12BO14950 172 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 RBP4P02753 201 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 TMEM225BP0DP42 221 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 CCL3L1P16619 93 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 GABRR1P24046 479 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 DUSP1P28562 367 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 SAA4P35542 130 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 AQP4P55087 323 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 PRB3Q04118 309 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-206ENST00000595974 MEF2CQ06413 473 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-206ENST00000595974 ASPHD2Q6ICH7 369 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 HCP5Q6MZN7 132 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 PPP1R35Q8TAP8 253 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 NRG4Q8WWG1 115 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 VCX3BQ9H321 246 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 HEXA-AS1Q9H8Q6 139 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 FKBP14Q9NWM8 211 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 ZNRD1Q9P1U0 126 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 GSTK1Q9Y2Q3 226 aa13.25□□□□□ -0.29
TRIM28-206ENST00000595974 TRBV5-5A0A0J9YX44 114 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 A0A1W2PRD5 423 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 A0A1W2PRF3 423 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 A0A1W2PRM7 423 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 MEIOCA2RUB1 952 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 SH2D1BO14796 132 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 MGST3O14880 152 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 PSPNO60542 156 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 PAHP00439 452 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 BMXP51813 675 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 SNU13P55769 128 aaKnown RBP13.24□□□□□ -0.29
TRIM28-206ENST00000595974 WNT4P56705 351 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 ERVFRD-1P60508 538 aa13.24□□□□□ -0.29
TRIM28-206ENST00000595974 RPL15P61313 204 aaKnown RBP13.24□□□□□ -0.29
TRIM28-206ENST00000595974 PPP3R1P63098 170 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms