RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 DLL4Q9NR61 685 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 UFSP2Q9NUQ7 469 aa12.88□□□□□ -0.35
SS18-215ENST00000580642 A0A0A6YYD4 124 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 A0A1W2PPR1 153 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 F8VVB4 439 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 F8VWA3 439 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 MFNGO00587 321 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 SH2D1BO14796 132 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 GEMIN2O14893 280 aaKnown RBP12.87□□□□□ -0.35
SS18-215ENST00000580642 SOCS1O15524 211 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 SOD3P08294 240 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 MUC1P15941 1255 aaPredicted RBP12.87□□□□□ -0.35
SS18-215ENST00000580642 LMO1P25800 156 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 CHATP28329 748 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 CBX5P45973 191 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 KCNJ3P48549 501 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 CCL8P80075 99 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 RBM39Q14498 530 aaKnown RBP12.87□□□□□ -0.35
SS18-215ENST00000580642 MOGAT2Q3SYC2 334 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 CDNFQ49AH0 187 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 ZNF826PQ6ZT77 177 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 GCSAMQ8N6F7 178 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 ST8SIA4Q92187 359 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 SDHCQ99643 169 aaPredicted RBP12.87□□□□□ -0.35
SS18-215ENST00000580642 NICN1Q9BSH3 213 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 RIMS4Q9H426 269 aaPredicted RBP12.87□□□□□ -0.35
SS18-215ENST00000580642 PLEKHF2Q9H8W4 249 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 UBTD1Q9HAC8 227 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 PLEKHJ1Q9NW61 149 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 TAS2R8Q9NYW2 309 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 TREM2Q9NZC2 230 aa12.87□□□□□ -0.35
SS18-215ENST00000580642 RBMX2Q9Y388 322 aaKnown RBP12.87□□□□□ -0.35
SS18-215ENST00000580642 IGHV1-69-2A0A0G2JMI3 117 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 OR7C1O76099 320 aaPredicted RBP12.86□□□□□ -0.35
SS18-215ENST00000580642 LPLP06858 475 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 GABRR1P24046 479 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 KCNJ8Q15842 424 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 PIGYQ3MUY2 71 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 PLAC9Q5JTB6 97 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 TEX36Q5VZQ5 186 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 C16orf87Q6PH81 154 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 GPX8Q8TED1 209 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 ARHGAP5-AS1Q96IT6 56 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 THAP7Q9BT49 309 aaPredicted RBP12.86□□□□□ -0.35
SS18-215ENST00000580642 DNTTIP1Q9H147 329 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 ABCA4P78363 2273 aa12.86□□□□□ -0.35
SS18-215ENST00000580642 H7C1Q1 480 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 OVOL3O00110 214 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 DEGS1O15121 323 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 RBBP9O75884 186 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 ECDO95905 644 aaPredicted RBP12.85□□□□□ -0.35
SS18-215ENST00000580642 GSTT2BP0CG30 244 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 IL7P13232 177 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 SSTR2P30874 369 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 MDH2P40926 338 aaKnown RBP12.85□□□□□ -0.35
SS18-215ENST00000580642 AP3S2P59780 193 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 ACTBP60709 375 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 ACTG1P63261 375 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 PAX5Q02548 391 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 SCN1BQ07699 218 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 IKZF1Q13422 519 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 MICBQ29980 383 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 HFEQ30201 348 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 TRIQKQ629K1 86 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 SIGIRRQ6IA17 410 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 SNX29P2Q8IUI4 249 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 SETD6Q8TBK2 473 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 IGFBPL1Q8WX77 278 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 RDH5Q92781 318 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 ZNF488Q96MN9 340 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 VRK1Q99986 396 aaPredicted RBP12.85□□□□□ -0.35
SS18-215ENST00000580642 CACNG6Q9BXT2 260 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 PECRQ9BY49 303 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 CHST6Q9GZX3 395 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 TMEM106BQ9NUM4 274 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 NLKQ9UBE8 527 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 MTFP1Q9UDX5 166 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 LAMP3Q9UQV4 416 aa12.85□□□□□ -0.35
SS18-215ENST00000580642 ROS1P08922 2347 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 LRRK2Q5S007 2527 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 TRAV38-1A0A0B4J264 116 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 MCRIP1C9JLW8 97 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 TMEM178BH3BS89 294 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.84□□□□□ -0.35
SS18-215ENST00000580642 J3QRK9 145 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 LGALS8O00214 317 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 NDUFA2O43678 99 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 HAND1O96004 215 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 CSF3P09919 207 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 GNB3P16520 340 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 GNG2P59768 71 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 SRSF7Q16629 238 aaKnown RBP eCLIP12.84□□□□□ -0.35
SS18-215ENST00000580642 ATPAF1Q5TC12 328 aaPredicted RBP12.84□□□□□ -0.35
SS18-215ENST00000580642 Q6P435 159 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 IZUMO1Q8IYV9 350 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 OR8H2Q8N162 312 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 ZCCHC24Q8N2G6 241 aaKnown RBP12.84□□□□□ -0.35
SS18-215ENST00000580642 C19orf18Q8NEA5 215 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 PPP1R35Q8TAP8 253 aa12.84□□□□□ -0.35
SS18-215ENST00000580642 YIPF5Q969M3 257 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms