RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ACAA1P09110 424 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-207ENST00000580002 CD3GP09693 182 aa21.11■□□□□ 0.97
SHMT1-207ENST00000580002 CD80P33681 288 aa21.11■□□□□ 0.97
SHMT1-207ENST00000580002 OR8H2Q8N162 312 aa21.11■□□□□ 0.97
SHMT1-207ENST00000580002 OR52I2Q8NH67 350 aa21.11■□□□□ 0.97
SHMT1-207ENST00000580002 PECRQ9BY49 303 aa21.11■□□□□ 0.97
SHMT1-207ENST00000580002 TACC2O95359 2948 aa21.11■□□□□ 0.97
SHMT1-207ENST00000580002 SRRM5B3KS81 715 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 OR7C1O76099 320 aaPredicted RBP21.1■□□□□ 0.97
SHMT1-207ENST00000580002 Q6ZTK2 550 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 MRPS24Q96EL2 167 aaKnown RBP21.1■□□□□ 0.97
SHMT1-207ENST00000580002 FAAP24Q9BTP7 215 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 GCN1Q92616 2671 aaKnown RBP21.1■□□□□ 0.97
SHMT1-207ENST00000580002 NDUFS7O75251 213 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 COL8A2P25067 703 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 CFHR2P36980 270 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 NR4A2P43354 598 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 PPOXP50336 477 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 TESK1Q15569 626 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 Q6P435 159 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 CCL17Q92583 94 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 BORCS5Q969J3 196 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 SULT4A1Q9BR01 284 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 LIME1Q9H400 295 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 PCDHB16Q9NRJ7 776 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 FAIMQ9NVQ4 179 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 RNF7Q9UBF6 113 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 OR14J1Q9UGF5 321 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 METRNQ9UJH8 293 aa21.1■□□□□ 0.97
SHMT1-207ENST00000580002 HSPB6O14558 160 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 HIST1H1DP16402 221 aaKnown RBP21.09■□□□□ 0.97
SHMT1-207ENST00000580002 TNFRSF1AP19438 455 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 CHATP28329 748 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 MNDAP41218 407 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 RANBP1P43487 201 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 TLE4Q04727 773 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 IKZF1Q13422 519 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 ATAD3CQ5T2N8 411 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 RAB12Q6IQ22 244 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 Q8TCH9 128 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 NUDCD2Q8WVJ2 157 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 NRGNQ92686 78 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 EGLN1Q9GZT9 426 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 KLK11Q9UBX7 282 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 FBN2P35556 2912 aa21.09■□□□□ 0.97
SHMT1-207ENST00000580002 MFNGO00587 321 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 PTBP1P26599 531 aaKnown RBP eCLIP21.08■□□□□ 0.97
SHMT1-207ENST00000580002 NHLRC3Q5JS37 347 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 BPIFB2Q8N4F0 458 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 GDPD1Q8N9F7 314 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 DEFB108BQ8NET1 73 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 OR10Z1Q8NGY1 313 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 YIPF5Q969M3 257 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 HDHD3Q9BSH5 251 aaPredicted RBP21.08■□□□□ 0.97
SHMT1-207ENST00000580002 DSCAMO60469 2012 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 CENPEQ02224 2701 aa21.08■□□□□ 0.97
SHMT1-207ENST00000580002 CELSR2Q9HCU4 2923 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 A0A0A6YYH2 397 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 LINC00854A0A1B0GVQ3 168 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 UBE2QL1A1L167 161 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 A6NJ64 397 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 SSX5O60225 188 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 UPK1BO75841 260 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 IL7P13232 177 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 PCGF3Q3KNV8 242 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 Q8IYB0 196 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 THAP7Q9BT49 309 aaPredicted RBP21.08■□□□□ 0.96
SHMT1-207ENST00000580002 PLEKHJ1Q9NW61 149 aa21.08■□□□□ 0.96
SHMT1-207ENST00000580002 TRAV24A0A0B4J272 114 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 RFPL4AA6NLU0 287 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 RFPL4AL1F8VTS6 287 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 SIRPB1O00241 398 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 STEAP3Q658P3 488 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 C16orf87Q6PH81 154 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 BAIAP2L2Q6UXY1 529 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 RDH5Q92781 318 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 PSMG3-AS1Q96PY0 264 aa21.07■□□□□ 0.96
SHMT1-207ENST00000580002 NBPF19A0A087WUL8 3843 aa21.06■□□□□ 0.96
SHMT1-207ENST00000580002 OR2H2O95918 312 aa21.06■□□□□ 0.96
SHMT1-207ENST00000580002 PITPNAQ00169 270 aa21.06■□□□□ 0.96
SHMT1-207ENST00000580002 ZNF146Q15072 292 aa21.06■□□□□ 0.96
SHMT1-207ENST00000580002 CD177Q8N6Q3 437 aa21.06■□□□□ 0.96
SHMT1-207ENST00000580002 ST8SIA4Q92187 359 aa21.06■□□□□ 0.96
SHMT1-207ENST00000580002 TRIM63Q969Q1 353 aa21.06■□□□□ 0.96
SHMT1-207ENST00000580002 SPG11Q96JI7 2443 aa21.06■□□□□ 0.96
SHMT1-207ENST00000580002 IGHV1-69-2A0A0G2JMI3 117 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 A0A1W2PQ09 198 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 CTDSPLO15194 276 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 PSG2P11465 335 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 AMY2BP19961 511 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 PRSS3P35030 304 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 DCTN2Q13561 401 aaKnown RBP21.05■□□□□ 0.96
SHMT1-207ENST00000580002 SMIM4Q8WVI0 70 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 ERGIC1Q969X5 290 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 NEDD4LQ96PU5 975 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 TMEM106BQ9NUM4 274 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 IGKV1D-17A0A075B6S4 117 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 TMEM178BH3BS89 294 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 DEGS1O15121 323 aa21.05■□□□□ 0.96
SHMT1-207ENST00000580002 PDCD6O75340 191 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms