RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 C8orf46Q8TAG6 207 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 CKLFQ9UBR5 152 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 TPRKBQ9Y3C4 175 aa16.05■□□□□ 0.16
SS18-209ENST00000578595 IGHV1-69DA0A0B4J2H0 117 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 CENPVL3A0A0U1RRI6 287 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 A0A1W2PPH5 198 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 A0A1W2PRD5 423 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 A0A1W2PRF3 423 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 A0A1W2PRM7 423 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 DNAJC9-AS1A6NH13 148 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 IGHV1-69P01742 117 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 CELP19835 753 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 MYF6P23409 242 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 DLX1P56177 255 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 SCN1BQ07699 218 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 KLRD1Q13241 179 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 DMKNQ6E0U4 476 aaPredicted RBP16.04■□□□□ 0.16
SS18-209ENST00000578595 ZSCAN4Q8NAM6 433 aaPredicted RBP16.04■□□□□ 0.16
SS18-209ENST00000578595 RPS4Y2Q8TD47 263 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 TNFAIP8L1Q8WVP5 186 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 ORAI1Q96D31 301 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 ZNF48Q96MX3 618 aaPredicted RBP16.04■□□□□ 0.16
SS18-209ENST00000578595 MND1Q9BWT6 205 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 ANKRD60Q9BZ19 345 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 CCDC90BQ9GZT6 254 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 CHST6Q9GZX3 395 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 TNFRSF19Q9NS68 423 aa16.04■□□□□ 0.16
SS18-209ENST00000578595 IGKV1-12A0A0C4DH73 117 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 MEX3AA1L020 520 aaKnown RBP16.03■□□□□ 0.16
SS18-209ENST00000578595 SIRPB1O00241 398 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 IGKV1D-12P01611 117 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 EEF1B2P24534 225 aaKnown RBP16.03■□□□□ 0.16
SS18-209ENST00000578595 DEFB112Q30KQ8 113 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 YIF1BQ5BJH7 314 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 DDI2Q5TDH0 399 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 NANOGP1Q8N7R0 232 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 OR52N4Q8NGI2 321 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 NKX3-1Q99801 234 aaPredicted RBP16.03■□□□□ 0.16
SS18-209ENST00000578595 FAM234AQ9H0X4 552 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 EXOSC4Q9NPD3 245 aaKnown RBP16.03■□□□□ 0.16
SS18-209ENST00000578595 ESM1Q9NQ30 184 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 FKBP14Q9NWM8 211 aa16.03■□□□□ 0.16
SS18-209ENST00000578595 A0A1W2PPK0 400 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 M0R1W7 72 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 SH2D1BO14796 132 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 KDM4BO94953 1096 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 ZNF44P15621 663 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 BPIFB3P59826 476 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 RIPK1Q13546 671 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 MED22Q15528 200 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 GRK1Q15835 563 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 Q499Y3 187 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 SPIN3Q5JUX0 258 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 C9orf139Q6ZV77 190 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 ZDHHC22Q8N966 263 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 DMRTB1Q96MA1 342 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 OR14A2Q96R54 314 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 NR1H4Q96RI1 486 aaPredicted RBP16.02■□□□□ 0.16
SS18-209ENST00000578595 S100A13Q99584 98 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 METTL8Q9H825 291 aaKnown RBP16.02■□□□□ 0.16
SS18-209ENST00000578595 HMG20AQ9NP66 347 aa16.02■□□□□ 0.16
SS18-209ENST00000578595 K7N7A8 449 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 GABRPO00591 440 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 ALX3O95076 343 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 BDKRB2P30411 391 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 VHLP40337 213 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 UBA52P62987 128 aaKnown RBP16.01■□□□□ 0.15
SS18-209ENST00000578595 GUCA2AQ02747 115 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 RSU1Q15404 277 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 SAXO1Q8IYX7 474 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 OR8H2Q8N162 312 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 ZNF485Q8NCK3 441 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 SPATA3Q8NHX4 192 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 PPP1R35Q8TAP8 253 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 SGCDQ92629 289 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 SNX22Q96L94 193 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 PGLYRP3Q96LB9 341 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 TMEM138Q9NPI0 162 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 PAK1IP1Q9NWT1 392 aaPredicted RBP16.01■□□□□ 0.15
SS18-209ENST00000578595 FAM96BQ9Y3D0 163 aa16.01■□□□□ 0.15
SS18-209ENST00000578595 TRBV5-5A0A0J9YX44 114 aa16■□□□□ 0.15
SS18-209ENST00000578595 hCG_1809904A0A1W2PP81 198 aa16■□□□□ 0.15
SS18-209ENST00000578595 A0A1W2PPE2 198 aa16■□□□□ 0.15
SS18-209ENST00000578595 A0A1W2PR64 198 aa16■□□□□ 0.15
SS18-209ENST00000578595 A0A1W2PRV1 198 aa16■□□□□ 0.15
SS18-209ENST00000578595 TMEM82A0PJX8 343 aa16■□□□□ 0.15
SS18-209ENST00000578595 RGS10O43665 173 aa16■□□□□ 0.15
SS18-209ENST00000578595 CCL3L1P16619 93 aa16■□□□□ 0.15
SS18-209ENST00000578595 ZNF93P35789 620 aaPredicted RBP16■□□□□ 0.15
SS18-209ENST00000578595 OR3A4PP47883 348 aa16■□□□□ 0.15
SS18-209ENST00000578595 ZP1P60852 638 aa16■□□□□ 0.15
SS18-209ENST00000578595 ZNF273Q14593 569 aa16■□□□□ 0.15
SS18-209ENST00000578595 NCR3LG1Q68D85 454 aa16■□□□□ 0.15
SS18-209ENST00000578595 ASPHD2Q6ICH7 369 aa16■□□□□ 0.15
SS18-209ENST00000578595 Q8N7P7 452 aa16■□□□□ 0.15
SS18-209ENST00000578595 TPRX1Q8N7U7 411 aa16■□□□□ 0.15
SS18-209ENST00000578595 OR5D13Q8NGL4 314 aa16■□□□□ 0.15
SS18-209ENST00000578595 OR10K1Q8NGX5 313 aa16■□□□□ 0.15
SS18-209ENST00000578595 TBC1D15Q8TC07 691 aa16■□□□□ 0.15
SS18-209ENST00000578595 ZFAND2BQ8WV99 257 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms