RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TRAV38-1A0A0B4J264 116 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 A0A0B4J2A0 478 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 SPAARA0A1B0GVQ0 90 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TCRBV7S3A2A0A539 114 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 SMIM9A6NGZ8 99 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 SLC38A8A6NNN8 435 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FAM166BA8MTA8 275 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 C21orf140B9A014 251 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 UMAD1C9J7I0 102 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 CLDN34H7C241 214 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 K7EPK0 472 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 P2RY10O00398 339 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 RFXANKO14593 260 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 GEMIN2O14893 280 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 CTDSPLO15194 276 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 XRCC3O43542 346 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 MPZL2O60487 215 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 CEACAM4O75871 244 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 UBL3O95164 117 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 RCBTB2O95199 551 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 UTS2O95399 124 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 HAND1O96004 215 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 HBZP02008 142 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TRGC2P03986 189 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 MAS1P04201 325 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 CTSLP07711 333 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FCGR3AP08637 254 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 MMP7P09237 267 aaPredicted RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 CXCL1P09341 107 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 C8orf89P0DMQ9 161 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR12D1P0DN82 309 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ATF1P18846 271 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 PSMB1P20618 241 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 MAOAP21397 527 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 SAT1P21673 171 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FCARP24071 287 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FGF9P31371 208 aaPredicted RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 SOAT1P35610 550 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 AVPR1AP37288 418 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR3A4PP47883 348 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 DNASE1L1P49184 302 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 GNG4P50150 75 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ASCL1P50553 236 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 DAPP51397 102 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 RND2P52198 227 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FOXG1P55316 489 aaPredicted RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 H2BFSP57053 126 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR12D2P58182 307 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TAS2R30P59541 319 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 UBE2NP61088 152 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 RPS25P62851 125 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 CRADDP78560 199 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ZXDBP98169 803 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 CDK3Q00526 305 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 RUNX1Q01196 453 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OC90Q02509 493 aaPredicted RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 ACVR1Q04771 509 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FUT7Q11130 342 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 C1DQ13901 141 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 ZNF266Q14584 549 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 GINS1Q14691 196 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 PDGFRLQ15198 375 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 RGNQ15493 299 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR1Q1Q15612 314 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 GABRA6Q16445 453 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TNXAQ16473 311 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 POU2AF1Q16633 256 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TTLL9Q3SXZ7 439 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TRMT12Q53H54 448 aaKnown RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 TMEM128Q5BJH2 165 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ALG10Q5BKT4 473 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 VWA2Q5GFL6 755 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 AADACL3Q5VUY0 350 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 WDR25Q64LD2 544 aaPredicted RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 ZNF776Q68DI1 518 aaPredicted RBP2.8□□□□□ -1.96
VPS35-208ENST00000568612 CD200R1LQ6Q8B3 271 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 BTNL8Q6UX41 500 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 PAQR9Q6ZVX9 377 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FA2HQ7L5A8 372 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 SIAH3Q8IW03 269 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR8I2Q8N0Y5 310 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 LRRC75A-AS1Q8N1F1 130 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 BEST3Q8N1M1 668 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 FAM71E2Q8N5Q1 922 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 EID2Q8N6I1 236 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TMEM251Q8N6I4 163 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ARIH2OSQ8N7S6 290 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 CDRT4Q8N9R6 151 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 ACVR1CQ8NER5 493 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 TSTD1Q8NFU3 115 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR11G2Q8NGC1 345 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR4K1Q8NGD4 311 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR5AP2Q8NGF4 316 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR1B1Q8NGR6 318 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR5B3Q8NH48 314 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 OR52P1PQ8NH57 321 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 LYPD6BQ8NI32 183 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 KCNG3Q8TAE7 436 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 NEIL3Q8TAT5 605 aa2.8□□□□□ -1.96
VPS35-208ENST00000568612 GRAPLQ8TC17 118 aaPredicted RBP2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms