RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TFF1P04155 84 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 ZNF93P35789 620 aaPredicted RBP10.73□□□□□ -0.69
CLK3-224ENST00000568605 MTNR1BP49286 362 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 CEBPDP49716 269 aaPredicted RBP10.73□□□□□ -0.69
CLK3-224ENST00000568605 COL10A1Q03692 680 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 GPR50Q13585 617 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 IRF3Q14653 427 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 TRAM1Q15629 374 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 TBCEQ15813 527 aaPredicted RBP10.73□□□□□ -0.69
CLK3-224ENST00000568605 USP43Q70EL4 1123 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 GDPD3Q7L5L3 318 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 FAM185AQ8N0U4 392 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 OR8H2Q8N162 312 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 FGFRL1Q8N441 504 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 NKAIN3Q8N8D7 197 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 LY6G5BQ8NDX9 201 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 PXT1Q8NFP0 134 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 OR51A2Q8NGJ7 313 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 OR5D13Q8NGL4 314 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 TNFAIP8L1Q8WVP5 186 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 SIRPDQ9H106 197 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 SEBOXQ9HB31 216 aaPredicted RBP10.73□□□□□ -0.69
CLK3-224ENST00000568605 EXOSC4Q9NPD3 245 aaKnown RBP10.73□□□□□ -0.69
CLK3-224ENST00000568605 FOXJ3Q9UPW0 622 aa10.73□□□□□ -0.69
CLK3-224ENST00000568605 LSM2Q9Y333 95 aaKnown RBP10.73□□□□□ -0.69
CLK3-224ENST00000568605 F8VVB4 439 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 F8VWA3 439 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 K7N7A8 449 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 M0R1W7 72 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 GABRPO00591 440 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 SH2D1BO14796 132 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 MRPS14O60783 128 aaKnown RBP10.72□□□□□ -0.69
CLK3-224ENST00000568605 TK1P04183 234 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 PSMA1P25786 263 aaKnown RBP10.72□□□□□ -0.69
CLK3-224ENST00000568605 NPBWR2P48146 333 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 SNU13P55769 128 aaKnown RBP10.72□□□□□ -0.69
CLK3-224ENST00000568605 ZP1P60852 638 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 RPS11P62280 158 aaKnown RBP eCLIP10.72□□□□□ -0.69
CLK3-224ENST00000568605 ARF6P62330 175 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 RPL31P62899 125 aaKnown RBP10.72□□□□□ -0.69
CLK3-224ENST00000568605 GUCA2AQ02747 115 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 MLLT11Q13015 90 aaPredicted RBP10.72□□□□□ -0.69
CLK3-224ENST00000568605 DOC2BQ14184 412 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 ZNF146Q15072 292 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 RSU1Q15404 277 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 KLF17Q5JT82 389 aaPredicted RBP10.72□□□□□ -0.69
CLK3-224ENST00000568605 NCR3LG1Q68D85 454 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 SVOPQ8N4V2 548 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 OR52N4Q8NGI2 321 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 TMEM158Q8WZ71 300 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 SNX22Q96L94 193 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 DERL3Q96Q80 235 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 OR5M11Q96RB7 305 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 SLC6A7Q99884 636 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 ELL3Q9HB65 397 aaPredicted RBP10.72□□□□□ -0.69
CLK3-224ENST00000568605 HMG20AQ9NP66 347 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 ISYNA1Q9NPH2 558 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 PCDHB16Q9NRJ7 776 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 SVEP1Q4LDE5 3571 aa10.72□□□□□ -0.69
CLK3-224ENST00000568605 DENRO43583 198 aaKnown RBP10.71□□□□□ -0.69
CLK3-224ENST00000568605 ZNF780AO75290 641 aaPredicted RBP10.71□□□□□ -0.69
CLK3-224ENST00000568605 GPX5O75715 221 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 CSTBP04080 98 aaKnown RBP10.71□□□□□ -0.69
CLK3-224ENST00000568605 SFTPBP07988 381 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 HSMCR30P0CW71 290 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 IGHV4-38-2P0DP08 117 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 MMP9P14780 707 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 IGFBP3P17936 291 aaPredicted RBP10.71□□□□□ -0.69
CLK3-224ENST00000568605 GABRR1P24046 479 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 HILS1P60008 231 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 ASPHD2Q6ICH7 369 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 C1orf122Q6ZSJ8 110 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 C9orf139Q6ZV77 190 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 ZNF367Q7RTV3 350 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 VMO1Q7Z5L0 202 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 CHST4Q8NCG5 386 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 SGCDQ92629 289 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 TBX15Q96SF7 602 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 TMED9Q9BVK6 235 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 METTL8Q9H825 291 aaKnown RBP10.71□□□□□ -0.69
CLK3-224ENST00000568605 ZMAT3Q9HA38 289 aaKnown RBP10.71□□□□□ -0.69
CLK3-224ENST00000568605 ZNF69Q9UC07 566 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 GSTK1Q9Y2Q3 226 aa10.71□□□□□ -0.69
CLK3-224ENST00000568605 IGHV3OR16-10A0A075B7F0 116 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 TRBV5-7A0A0A0MS05 114 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 IGKV1-12A0A0C4DH73 117 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 FUOMA2VDF0 154 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 RNF212BA8MTL3 300 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 TRIM77I1YAP6 450 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 ZNF737O75373 536 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 IGKV1D-12P01611 117 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 ZNF44P15621 663 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 TGFBR2P37173 567 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 EDDM3BP56851 147 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 GPR176Q14439 515 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 IL13RA2Q14627 380 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 GRK1Q15835 563 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 LIPKQ5VXJ0 399 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 ELP2Q6IA86 826 aa10.7□□□□□ -0.7
CLK3-224ENST00000568605 METAP1DQ6UB28 335 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms