RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 MCUR1Q96AQ8 359 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 PYURFQ96I23 114 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 TEAD3Q99594 435 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 TM2D3Q9BRN9 247 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 ARMC1Q9NVT9 282 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLK3-223ENST00000568488 BAIAP2Q9UQB8 552 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 KLHDC2Q9Y2U9 406 aa12.66□□□□□ -0.38
CLK3-223ENST00000568488 UBE2J1Q9Y385 318 aaPredicted RBP12.66□□□□□ -0.38
CLK3-223ENST00000568488 A6NIN4 97 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 TRIM64CA6NLI5 447 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 OOSP1A8MZH6 123 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 LDLRAD4O15165 306 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 SOX14O95416 240 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 GASTP01350 101 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 MPZP25189 248 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 GDNFP39905 211 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 KPNB1Q14974 876 aaKnown RBP12.65□□□□□ -0.38
CLK3-223ENST00000568488 LHFPL2Q6ZUX7 228 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 RPEQ96AT9 228 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 CEP19Q96LK0 163 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 PBOV1Q9GZY1 135 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 GAL3ST2Q9H3Q3 398 aa12.65□□□□□ -0.38
CLK3-223ENST00000568488 FAM230AA0A1W2PPH8 454 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A18PA6NE21 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A16PA6NEW6 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A20PA6NIJ5 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A9PA6NNJ1 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A12PA8MX19 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A5PA8MXJ8 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 LY6LH3BQJ8 138 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 AP4M1O00189 453 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 CCRL2O00421 344 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FGF16O43320 207 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 HAND1O96004 215 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FABP3P05413 133 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A15PP0C7V4 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A13PP0C7W8 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A14PP0C7W9 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM90A24PP0C7X0 464 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 GP9P14770 177 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 SPNP16150 400 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 DUSP1P28562 367 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 IL24Q13007 206 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 SRSF7Q16629 238 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLK3-223ENST00000568488 HEPN1Q6WQI6 88 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 TOMM40LQ969M1 308 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 ITFG2Q969R8 447 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 SLAMF9Q96A28 289 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 HRASLS5Q96KN8 279 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 ATP6V1G3Q96LB4 118 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 BTBD10Q9BSF8 475 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 GON7Q9BXV9 100 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 PKIBQ9C010 78 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FAM206AQ9NX38 181 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 MTCH1Q9NZJ7 389 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 GLS2Q9UI32 602 aa12.64□□□□□ -0.39
CLK3-223ENST00000568488 FRAS1Q86XX4 4008 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 TRGV10A0A0A0MS01 117 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 ACOD1A6NK06 481 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 DLGAP1O14490 977 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 NDUFAB1O14561 156 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 DHRS3O75911 302 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 POU3F4P49335 361 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 HCCSP53701 268 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 P2RX3P56373 397 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 FOXE3Q13461 319 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 ZNF429Q86V71 674 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 C4orf3Q8WVX3 66 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 EMG1Q92979 244 aaKnown RBP12.63□□□□□ -0.39
CLK3-223ENST00000568488 ISYNA1Q9NPH2 558 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 CMC2Q9NRP2 79 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 LAMP5Q9UJQ1 280 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 SLC7A11Q9UPY5 501 aa12.63□□□□□ -0.39
CLK3-223ENST00000568488 MGST3O14880 152 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 PSPNO60542 156 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 SAP30O75446 220 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 SEMG1P04279 462 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 ELANEP08246 267 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 MYF6P23409 242 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 CD34P28906 385 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 SNU13P55769 128 aaKnown RBP12.62□□□□□ -0.39
CLK3-223ENST00000568488 FHL3Q13643 280 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 AQP11Q8NBQ7 271 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 OR4D6Q8NGJ1 314 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 OR1N2Q8NGR9 330 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 CADM1Q9BY67 442 aaKnown RBP12.62□□□□□ -0.39
CLK3-223ENST00000568488 IL1RAPQ9NPH3 570 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 PCDHB16Q9NRJ7 776 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 IL36RNQ9UBH0 155 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 GTF2A1LQ9UNN4 478 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 U3KQV3 271 aa12.62□□□□□ -0.39
CLK3-223ENST00000568488 NCBP2LA6PVI3 153 aaKnown RBP12.61□□□□□ -0.39
CLK3-223ENST00000568488 H3BSH0 61 aa12.61□□□□□ -0.39
CLK3-223ENST00000568488 TNFRSF11BO00300 401 aa12.61□□□□□ -0.39
CLK3-223ENST00000568488 IGKV1D-33P01593 117 aa12.61□□□□□ -0.39
CLK3-223ENST00000568488 IGKV1-33P01594 117 aa12.61□□□□□ -0.39
CLK3-223ENST00000568488 IGLV3-1P01715 115 aa12.61□□□□□ -0.39
CLK3-223ENST00000568488 CALCBP10092 127 aa12.61□□□□□ -0.39
CLK3-223ENST00000568488 COX4I1P13073 169 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms