RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 METTL8Q9H825 291 aaKnown RBP12.31□□□□□ -0.44
VPS39-210ENST00000568357 UNKLQ9H9P5 680 aaKnown RBP12.31□□□□□ -0.44
VPS39-210ENST00000568357 NOX4Q9NPH5 578 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 PLCXD1Q9NUJ7 323 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 PSORS1C1Q9UIG5 152 aa12.31□□□□□ -0.44
VPS39-210ENST00000568357 MGAM2Q2M2H8 2515 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 SULT1B1O43704 296 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 CYB5AP00167 134 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 MELTFP08582 738 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 PIPP12273 146 aaPredicted RBP12.3□□□□□ -0.44
VPS39-210ENST00000568357 C21orf33P30042 268 aaPredicted RBP12.3□□□□□ -0.44
VPS39-210ENST00000568357 PDLIM3Q53GG5 364 aaPredicted RBP12.3□□□□□ -0.44
VPS39-210ENST00000568357 HCP5Q6MZN7 132 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 ZNF529Q6P280 563 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 C17orf107Q6ZR85 190 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 Q8IYB0 196 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 ASCC1Q8N9N2 400 aaKnown RBP12.3□□□□□ -0.44
VPS39-210ENST00000568357 BPIFB6Q8NFQ5 453 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 OR52N4Q8NGI2 321 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 OR52N1Q8NH53 320 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 VCXQ9H320 206 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 ZMAT3Q9HA38 289 aaKnown RBP12.3□□□□□ -0.44
VPS39-210ENST00000568357 SEBOXQ9HB31 216 aaPredicted RBP12.3□□□□□ -0.44
VPS39-210ENST00000568357 TNFRSF19Q9NS68 423 aa12.3□□□□□ -0.44
VPS39-210ENST00000568357 CHCHD3Q9NX63 227 aaKnown RBP12.3□□□□□ -0.44
VPS39-210ENST00000568357 CNOT2Q9NZN8 540 aaKnown RBP12.3□□□□□ -0.44
VPS39-210ENST00000568357 EFCAB10A6NFE3 127 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 KDM4BO94953 1096 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 HAND1O96004 215 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 HCKP08631 526 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 HKR1P10072 659 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 CCL3L1P16619 93 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 PRKACAP17612 351 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 SNU13P55769 128 aaKnown RBP12.29□□□□□ -0.44
VPS39-210ENST00000568357 ZP1P60852 638 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 GUCA2AQ02747 115 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 BLMHQ13867 455 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 DOC2BQ14184 412 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 ZNF273Q14593 569 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 ZNF146Q15072 292 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 KISS1Q15726 138 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 DMKNQ6E0U4 476 aaPredicted RBP12.29□□□□□ -0.44
VPS39-210ENST00000568357 C16orf87Q6PH81 154 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 ZFP41Q8N8Y5 198 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 OR51A2Q8NGJ7 313 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 GPR148Q8TDV2 347 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 GHSRQ92847 366 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 HMG20AQ9NP66 347 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 FKBP14Q9NWM8 211 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 ZNF281Q9Y2X9 895 aa12.29□□□□□ -0.44
VPS39-210ENST00000568357 MEX3AA1L020 520 aaKnown RBP12.28□□□□□ -0.44
VPS39-210ENST00000568357 NPFFO15130 113 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 PSPNO60542 156 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 RAB3AP20336 220 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 EEF1B2P24534 225 aaKnown RBP12.28□□□□□ -0.44
VPS39-210ENST00000568357 UBE2E1P51965 193 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 AQP4P55087 323 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 DLX6P56179 175 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 AWAT1Q58HT5 328 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 NCR3LG1Q68D85 454 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 AHSA2Q719I0 299 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 SAXO1Q8IYX7 474 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 OR8H2Q8N162 312 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 OR5D13Q8NGL4 314 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 OR13C5Q8NGS8 318 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 TBC1D15Q8TC07 691 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 ORAI1Q96D31 301 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 SMIM19Q96E16 107 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 SNX22Q96L94 193 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 CHIAQ9BZP6 476 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 NEK6Q9HC98 313 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 TAS2R4Q9NYW5 299 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 FAM96BQ9Y3D0 163 aa12.28□□□□□ -0.44
VPS39-210ENST00000568357 H0YJX3 145 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 IGHV4-59P01825 116 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 TMEM225BP0DP42 221 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 IER3P46695 156 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 EDDM3BP56851 147 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 RPS11P62280 158 aaKnown RBP eCLIP12.27□□□□□ -0.45
VPS39-210ENST00000568357 MED21Q13503 144 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 SPIN3Q5JUX0 258 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 FIP1L1Q6UN15 594 aaKnown RBP12.27□□□□□ -0.45
VPS39-210ENST00000568357 STX19Q8N4C7 294 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 TMEM86BQ8N661 226 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 TPRX1Q8N7U7 411 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 ZSCAN4Q8NAM6 433 aaPredicted RBP12.27□□□□□ -0.45
VPS39-210ENST00000568357 OR4S1Q8NGB4 309 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 TMEM106AQ96A25 262 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 PGLYRP3Q96LB9 341 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 NKX3-1Q99801 234 aaPredicted RBP12.27□□□□□ -0.45
VPS39-210ENST00000568357 CHST6Q9GZX3 395 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 GSTK1Q9Y2Q3 226 aa12.27□□□□□ -0.45
VPS39-210ENST00000568357 SF3B6Q9Y3B4 125 aaKnown RBP12.27□□□□□ -0.45
VPS39-210ENST00000568357 TRBV5-5A0A0J9YX44 114 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 A0A1W2PPH5 198 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 MEIOCA2RUB1 952 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 FAM181BA6NEQ2 426 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 SIRPB1O00241 398 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 OR2H2O95918 312 aa12.26□□□□□ -0.45
VPS39-210ENST00000568357 CD2P06729 351 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms