RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 DPPA2Q7Z7J5 298 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 SAXO1Q8IYX7 474 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 C1QTNF6Q9BXI9 259 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 OPA3Q9H6K4 179 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 ZNF442Q9H7R0 627 aa17.4■□□□□ 0.38
CLN3-230ENST00000568076 CRYM-AS1A6NIL9 109 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 SPINK2P20155 84 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 PMELP40967 661 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 IL15RAQ13261 267 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 TMEM211Q6ICI0 200 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 MYPOPQ86VE0 399 aaPredicted RBP17.39■□□□□ 0.37
CLN3-230ENST00000568076 TMEM200AQ86VY9 491 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 MED12LQ86YW9 2145 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 FAM219AQ8IW50 185 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 POC1AQ8NBT0 407 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 RELL2Q8NC24 303 aaPredicted RBP17.39■□□□□ 0.37
CLN3-230ENST00000568076 SLC30A7Q8NEW0 376 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 OR5A2Q8NGI9 324 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 OR1S1Q8NH92 325 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 RRNAD1Q96FB5 475 aaKnown RBP17.39■□□□□ 0.37
CLN3-230ENST00000568076 POM121Q96HA1 1249 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 METTL8Q9H825 291 aaKnown RBP17.39■□□□□ 0.37
CLN3-230ENST00000568076 ZNF286AQ9HBT8 521 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 SYNGR1O43759 233 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 HOXB5P09067 269 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 FGF12P61328 243 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 TFAP2EQ6VUC0 442 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 P4HA3Q7Z4N8 544 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 GCNT2Q8N0V5 402 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 INO80EQ8NBZ0 244 aaPredicted RBP17.39■□□□□ 0.37
CLN3-230ENST00000568076 NANOS1Q8WY41 292 aaKnown RBP17.39■□□□□ 0.37
CLN3-230ENST00000568076 OR5P3Q8WZ94 311 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 DCUN1D4Q92564 292 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 TOMM40LQ969M1 308 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 MED9Q9NWA0 146 aa17.39■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A10PA6NDY2 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A18PA6NE21 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A16PA6NEW6 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 MFSD2BA6NFX1 497 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A20PA6NIJ5 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A8PA6NJQ4 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A7PA6NKC0 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A22PA8MWA6 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A12PA8MX19 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A5PA8MXJ8 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A23PA8MXZ1 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A15PP0C7V4 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A13PP0C7W8 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A14PP0C7W9 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 FAM90A24PP0C7X0 464 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 RBPMSQ93062 196 aaKnown RBP17.38■□□□□ 0.37
CLN3-230ENST00000568076 C2orf50Q96LR7 162 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 DHRS9Q9BPW9 319 aa17.38■□□□□ 0.37
CLN3-230ENST00000568076 ZNF471Q9BX82 626 aaPredicted RBP17.38■□□□□ 0.37
CLN3-230ENST00000568076 A0A1W2PR80 420 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 CELA3BP08861 270 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 IGHV1-2P23083 117 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 FCGR2CP31995 323 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 RBM39Q14498 530 aaKnown RBP17.37■□□□□ 0.37
CLN3-230ENST00000568076 FAM74A1Q5RGS3 127 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 SPATA46Q5T0L3 261 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 CCDC28AQ8IWP9 274 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 SGPP2Q8IWX5 399 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 EXTL1Q92935 676 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 SLX1AQ9BQ83 275 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 C1orf123Q9NWV4 160 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 SDHAF2Q9NX18 166 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 OR5AC2Q9NZP5 309 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 CFAP47Q6ZTR5 3102 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 ZNF728P0DKX0 622 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 LYL1P12980 280 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 ZNF14P17017 642 aaPredicted RBP17.37■□□□□ 0.37
CLN3-230ENST00000568076 RBMXP38159 391 aaKnown RBP17.37■□□□□ 0.37
CLN3-230ENST00000568076 PIGPP57054 158 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 FXYD4P59646 89 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 OR2T2Q6IF00 324 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 HIST1H2AAQ96QV6 131 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 TRIB1Q96RU8 372 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 FRYQ5TBA9 3013 aa17.37■□□□□ 0.37
CLN3-230ENST00000568076 TEX13DA0A0J9YY54 714 aaPredicted RBP17.36■□□□□ 0.37
CLN3-230ENST00000568076 SHOXO15266 292 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 TCF15Q12870 199 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 RAB32Q13637 225 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 IGFBP7Q16270 282 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 PRSS54Q6PEW0 395 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 IGF2-ASQ6U949 168 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 MKXQ8IYA7 352 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 RASL12Q9NYN1 266 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 RCC2Q9P258 522 aaKnown RBP17.36■□□□□ 0.37
CLN3-230ENST00000568076 KCNMB2Q9Y691 235 aa17.36■□□□□ 0.37
CLN3-230ENST00000568076 URB1O60287 2271 aaKnown RBP17.36■□□□□ 0.37
CLN3-230ENST00000568076 SPENQ96T58 3664 aaKnown RBP17.36■□□□□ 0.37
CLN3-230ENST00000568076 ANKRD30BLA7E2S9 258 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 TRAPPC2LH3BP13 241 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 TEX46H3BTG2 121 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 IL32P24001 234 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 NUBP1P53384 320 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 GUSBP1Q15486 140 aa17.35■□□□□ 0.37
CLN3-230ENST00000568076 PLEKHN1Q494U1 663 aaPredicted RBP17.35■□□□□ 0.37
CLN3-230ENST00000568076 HAGHLQ6PII5 290 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms