RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 OR5L1Q8NGL2 311 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 OR1K1Q8NGR3 316 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 HPSE2Q8WWQ2 592 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 RTN4IP1Q8WWV3 396 aaPredicted RBP5.39□□□□□ -1.55
CLN3-223ENST00000566472 EXTL1Q92935 676 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 RRNAD1Q96FB5 475 aaKnown RBP5.39□□□□□ -1.55
CLN3-223ENST00000566472 ABHD14BQ96IU4 210 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 C18orf12Q96KH6 178 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 POM121L2Q96KW2 1035 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 HIST1H2AAQ96QV6 131 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 PRRX2Q99811 253 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 PAPOLGQ9BWT3 736 aaKnown RBP5.39□□□□□ -1.55
CLN3-223ENST00000566472 PKIBQ9C010 78 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 CALHM2Q9HA72 323 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 TMEM9BQ9NQ34 198 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 MMP26Q9NRE1 261 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 GLRX2Q9NS18 164 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 TAS2R3Q9NYW6 316 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 OR5AC2Q9NZP5 309 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 PCDHB10Q9UN67 800 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 NSG2Q9Y328 171 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 POMT1Q9Y6A1 747 aa5.39□□□□□ -1.55
CLN3-223ENST00000566472 KIAA1549Q9HCM3 1950 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 CABIN1Q9Y6J0 2220 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 LOC105371267A0A1B0GV96 52 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 C5orf49A4QMS7 147 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 MSGN1A6NI15 193 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 ANKRD30BLA7E2S9 258 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 MPTX1A8MV57 137 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 TRAPPC2LH3BP13 241 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 K7EPK0 472 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 GPR137BO60478 399 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SCO1O75880 301 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 JTBO76095 146 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 OR7C1O76099 320 aaPredicted RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 TNFSF15O95150 251 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 DIRAS3O95661 229 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 CDS2O95674 445 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 NAPSAO96009 420 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 PLATP00750 562 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 HLA-HP01893 362 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 WNT2P09544 360 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 HOXB1P14653 301 aaPredicted RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 IL32P24001 234 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 DUSP1P28562 367 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 RPL12P30050 165 aaKnown RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 FCGR2CP31995 323 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 OPRM1P35372 400 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 APLNRP35414 380 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 P2RY1P47900 373 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SULT1A2P50226 295 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 BLOC1S1P78537 153 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SRYQ05066 204 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 IL24Q13007 206 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 ZNF273Q14593 569 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SLC10A1Q14973 349 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 RSPO4Q2I0M5 234 aaPredicted RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 DMRTC1Q5HYR2 192 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 GPR157Q5UAW9 335 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SHEQ5VZ18 495 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 TMEM268Q5VZI3 342 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 UNQ6126/PRO20091Q6UXV3 157 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 NUFIP2Q7Z417 695 aaKnown RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 GLRX5Q86SX6 157 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 ZNF573Q86YE8 665 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SPAG16Q8N0X2 631 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 OR1S2Q8NGQ3 325 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 LHFPL5Q8TAF8 219 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 BCL2L2Q92843 193 aaPredicted RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 IL22RA2Q969J5 263 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 MRPL24Q96A35 216 aaKnown RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 MARS2Q96GW9 593 aaKnown RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 CYYR1Q96J86 154 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SMIM8Q96KF7 97 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SPIN2AQ99865 258 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SPIN2BQ9BPZ2 258 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 C1QTNF6Q9BXI9 259 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 HES7Q9BYE0 225 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 LIME1Q9H400 295 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 ZNF442Q9H7R0 627 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 IFT22Q9H7X7 185 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 Q9N2K0 584 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 SLC2A9Q9NRM0 540 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 ASF1BQ9NVP2 202 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 LPAR3Q9UBY5 353 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 TMED3Q9Y3Q3 217 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 EML6Q6ZMW3 1958 aa5.38□□□□□ -1.55
CLN3-223ENST00000566472 PHF3Q92576 2039 aaKnown RBP5.38□□□□□ -1.55
CLN3-223ENST00000566472 C5orf42Q9H799 3197 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 KMT2EQ8IZD2 1858 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 BORCS7-ASMTA0A0B4J1R7 106 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TRGV5A0A0B4J1U4 118 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TMEM218A2RU14 115 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 LRP5LA4QPB2 252 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 CD300LBA8K4G0 201 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 ZNF732B4DXR9 585 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TRDCB7Z8K6 153 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 LGALS8O00214 317 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 TUSC2O75896 110 aa5.37□□□□□ -1.55
CLN3-223ENST00000566472 F10P00742 488 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms