RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 DHRS3O75911 302 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 HAND1O96004 215 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 GASTP01350 101 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 IGLV1-47P01700 117 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 IGHG2P01859 326 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 IGHA1P01876 353 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 FABP3P05413 133 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 COX4I1P13073 169 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 MPZP25189 248 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 CDX1P47902 265 aaPredicted RBP5.74□□□□□ -1.49
VPS4A-203ENST00000564399 INSL3P51460 131 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 IL24Q13007 206 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 GPR50Q13585 617 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 KPNB1Q14974 876 aaKnown RBP5.74□□□□□ -1.49
VPS4A-203ENST00000564399 HLA-DRB5Q30154 266 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 HEPN1Q6WQI6 88 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 THNSL2Q86YJ6 484 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 EGFL6Q8IUX8 553 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 C5orf56Q8N8D9 126 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 OR52N4Q8NGI2 321 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 OR56B4Q8NH76 319 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 TOMM40LQ969M1 308 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 SLAMF9Q96A28 289 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 HRASLS5Q96KN8 279 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 CEP19Q96LK0 163 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 TEAD3Q99594 435 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 LYSTQ99698 3801 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 PBOV1Q9GZY1 135 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 EFCAB1Q9HAE3 211 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 EDA2RQ9HAV5 297 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 ZNF286AQ9HBT8 521 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 CMC2Q9NRP2 79 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 LAMP5Q9UJQ1 280 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 GTF2A1LQ9UNN4 478 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 KLHDC2Q9Y2U9 406 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 UBE2J1Q9Y385 318 aaPredicted RBP5.74□□□□□ -1.49
VPS4A-203ENST00000564399 STARD9Q9P2P6 4700 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 DNAH1Q9P2D7 4330 aa5.74□□□□□ -1.49
VPS4A-203ENST00000564399 HUWE1Q7Z6Z7 4374 aaKnown RBP5.73□□□□□ -1.49
VPS4A-203ENST00000564399 RBMY1BA6NDE4 496 aaKnown RBP5.73□□□□□ -1.49
VPS4A-203ENST00000564399 RBMY1EA6NEQ0 496 aaKnown RBP5.73□□□□□ -1.49
VPS4A-203ENST00000564399 A6NIN4 97 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 LINC01548A6NM66 108 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 AP4M1O00189 453 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 TNFRSF11BO00300 401 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 DLGAP1O14490 977 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 MGST3O14880 152 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 LDLRAD4O15165 306 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 KRT36O76013 467 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 CCNB2O95067 398 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 SEMG1P04279 462 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 ELANEP08246 267 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 HCKP08631 526 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 RBMY1DP0C7P1 496 aaKnown RBP5.73□□□□□ -1.49
VPS4A-203ENST00000564399 NFYBP25208 207 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 DUSP1P28562 367 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 GDNFP39905 211 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 POU3F4P49335 361 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 SNU13P55769 128 aaKnown RBP5.73□□□□□ -1.49
VPS4A-203ENST00000564399 P2RX3P56373 397 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 PSME3P61289 254 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 RPS7P62081 194 aaKnown RBP5.73□□□□□ -1.49
VPS4A-203ENST00000564399 C16orf89Q6UX73 402 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 ZNF429Q86V71 674 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 RNF148Q8N7C7 305 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 AQP11Q8NBQ7 271 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 OR11H1Q8NG94 326 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 OR4D6Q8NGJ1 314 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 EMG1Q92979 244 aaKnown RBP5.73□□□□□ -1.49
VPS4A-203ENST00000564399 GON7Q9BXV9 100 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 CADM1Q9BY67 442 aaKnown RBP5.73□□□□□ -1.49
VPS4A-203ENST00000564399 MROQ9BYG7 248 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 PKIBQ9C010 78 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 PCDHB16Q9NRJ7 776 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 FAM206AQ9NX38 181 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 MTCH1Q9NZJ7 389 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 DNAJB9Q9UBS3 223 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 SLC7A11Q9UPY5 501 aa5.73□□□□□ -1.49
VPS4A-203ENST00000564399 FUOMA2VDF0 154 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A18PA6NE21 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A16PA6NEW6 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A20PA6NIJ5 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 TRIM64CA6NLI5 447 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A9PA6NNJ1 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 NCBP2LA6PVI3 153 aaKnown RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A12PA8MX19 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A5PA8MXJ8 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 PRR23D1E9PI22 279 aaPredicted RBP5.72□□□□□ -1.49
VPS4A-203ENST00000564399 LY6LH3BQJ8 138 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 SIRPB1O00241 398 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 CCRL2O00421 344 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 PSPNO60542 156 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 SAP30O75446 220 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 IGKV1D-33P01593 117 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 IGKV1-33P01594 117 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 OR8U8P0C7N1 319 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A15PP0C7V4 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A13PP0C7W8 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A14PP0C7W9 464 aa5.72□□□□□ -1.49
VPS4A-203ENST00000564399 FAM90A24PP0C7X0 464 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms