RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CARFQ8N187 725 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 SEMA5BQ9P283 1151 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 DMDP11532 3685 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 IGLV3-32A0A0A0MS00 114 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 CCDC163A0A0D9SF12 145 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 DHHO43323 396 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 CD63P08962 238 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 SLAMF9Q96A28 289 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 GPHA2Q96T91 129 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 SPSB2Q99619 263 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 ABHD14AQ9BUJ0 271 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 DECR2Q9NUI1 292 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 MTCH2Q9Y6C9 303 aa11.48□□□□□ -0.57
CLN3-210ENST00000563874 GPR137BO60478 399 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 S100A8P05109 93 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 EDN3P14138 238 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 RAC2P15153 192 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 RNF212Q495C1 297 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 NCMAPQ5T1S8 102 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 WDR74Q6RFH5 385 aaPredicted RBP11.47□□□□□ -0.57
CLN3-210ENST00000563874 RABEPKQ7Z6M1 372 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 OR10AD1Q8NGE0 317 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 ZNF251Q9BRH9 671 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 GINS3Q9BRX5 216 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 ULBP2Q9BZM5 246 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 ARV1Q9H2C2 271 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 CHRDQ9H2X0 955 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 CHCHD2Q9Y6H1 151 aaPredicted RBP11.47□□□□□ -0.57
CLN3-210ENST00000563874 NSG1A0A0A6YYJ2 146 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 CDRT15L2A8MXV6 281 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 OR8U8P0C7N1 319 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 RD3LP0DJH9 198 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 SHBQ15464 509 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 RTL6Q6ICC9 239 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 ZNF774Q6NX45 483 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 LIAT1Q6ZQX7 453 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 KMT5CQ86Y97 462 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 FBXL14Q8N1E6 418 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 AKR7LQ8NHP1 331 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 HPSE2Q8WWQ2 592 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 MIOXQ9UGB7 285 aa11.47□□□□□ -0.57
CLN3-210ENST00000563874 TRBV23-1A0A0A0MS06 115 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 IGKV1-12A0A0C4DH73 117 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 ST8SIA3O43173 380 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 IGKV1D-12P01611 117 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 CCL20P78556 96 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 PPA1Q15181 289 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 RAB30Q15771 203 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 SLC35G3Q8N808 338 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 SPTSSAQ969W0 71 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 MSI2Q96DH6 328 aaKnown RBP11.46□□□□□ -0.57
CLN3-210ENST00000563874 SLC35B3Q9H1N7 401 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 FAM24AA6NFZ4 105 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 CA11O75493 328 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 CLN5O75503 358 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 ONECUT2O95948 504 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 LCATP04180 440 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 CHATP28329 748 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 OTX1P32242 354 aaPredicted RBP11.46□□□□□ -0.57
CLN3-210ENST00000563874 EIF1P41567 113 aaKnown RBP11.46□□□□□ -0.57
CLN3-210ENST00000563874 H3F3AP84243 136 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 TMEM68Q96MH6 324 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 TP53RKQ96S44 253 aa11.46□□□□□ -0.57
CLN3-210ENST00000563874 NXPH3O95157 252 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 RNF224P0DH78 156 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 DUSP1P28562 367 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 ZNF239Q16600 458 aaKnown RBP11.46□□□□□ -0.58
CLN3-210ENST00000563874 FADS6Q8N9I5 356 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 ZFP62Q8NB50 900 aaPredicted RBP11.46□□□□□ -0.58
CLN3-210ENST00000563874 OR1J1Q8NGS3 322 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 BORCS8Q96FH0 119 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 GALNT14Q96FL9 552 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 C18orf12Q96KH6 178 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 MAGT1Q9H0U3 335 aa11.46□□□□□ -0.58
CLN3-210ENST00000563874 A0A1B0GWJ7 208 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 H7C1Q1 480 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 ZNHIT1O43257 154 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 C10orf128Q5T292 105 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 GUSBP11Q6P575 273 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 Q6ZPA2 131 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 TMEM123Q8N131 208 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 TAAR9Q96RI9 348 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 SEBOXQ9HB31 216 aaPredicted RBP11.45□□□□□ -0.58
CLN3-210ENST00000563874 METTL1Q9UBP6 276 aaKnown RBP11.45□□□□□ -0.58
CLN3-210ENST00000563874 ST3GAL6Q9Y274 331 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 MMP24Q9Y5R2 645 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 ZNF727A8MUV8 499 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 TNFSF11O14788 317 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 CCL3P10147 92 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 AADACP22760 399 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 UCP2P55851 309 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 EWSR1Q01844 656 aaKnown RBP eCLIP11.45□□□□□ -0.58
CLN3-210ENST00000563874 CADM4Q8NFZ8 388 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 TMEM54Q969K7 222 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 P4HTMQ9NXG6 502 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 RARRES3Q9UL19 164 aa11.45□□□□□ -0.58
CLN3-210ENST00000563874 LOC102725191A0A1B0GVB3 256 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 NKX2-6A6NCS4 301 aa11.44□□□□□ -0.58
CLN3-210ENST00000563874 ATXN7O15265 892 aaPredicted RBP11.44□□□□□ -0.58
CLN3-210ENST00000563874 IGHV2-5P01817 119 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms