RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PAX5Q02548 391 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 PLA2G7Q13093 441 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 DHRS2Q13268 280 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ZNF345Q14585 488 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ZNF146Q15072 292 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 MSMO1Q15800 293 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 TAF9Q16594 264 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 TBR1Q16650 682 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 MICBQ29980 383 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ABCA11PQ4W5N1 156 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ATPAF1Q5TC12 328 aaPredicted RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 RGS7BPQ6MZT1 257 aaPredicted RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 TMEM65Q6PI78 240 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 GSG1LQ6UXU4 331 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 GFRALQ6UXV0 394 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 RFPL4BQ6ZWI9 263 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 KCTD9Q7L273 389 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 TMED4Q7Z7H5 227 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 CMTM1Q8IZ96 169 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 FAM58AQ8N1B3 248 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 NUP37Q8NFH4 326 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 OR11H7Q8NGC8 314 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 OR10AD1Q8NGE0 317 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 OR4A4PQ8NGN8 299 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 OR5M8Q8NGP6 311 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 OR10Z1Q8NGY1 313 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 CAPSLQ8WWF8 208 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 HPSE2Q8WWQ2 592 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 SLC6A7Q99884 636 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 VKORC1Q9BQB6 163 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 PDCD10Q9BUL8 212 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ST6GALNAC5Q9BVH7 336 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 NMES1Q9C002 83 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 TINAGL1Q9GZM7 467 aaPredicted RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 TLNRD1Q9H1K6 362 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 OR51I2Q9H344 312 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ZMAT3Q9HA38 289 aaKnown RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 DLL4Q9NR61 685 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 CACFD1Q9UGQ2 172 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 PURGQ9UJV8 347 aaKnown RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 ZDHHC8Q9ULC8 765 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 WASF3Q9UPY6 502 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 TP53TG5Q9Y2B4 290 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ZNF835Q9Y2P0 537 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 SLC25A15Q9Y619 301 aa6.45□□□□□ -1.38
VPS39-204ENST00000561818 ZFHX2Q9C0A1 2572 aaPredicted RBP6.45□□□□□ -1.38
VPS39-204ENST00000561818 A0A0A6YYD4 124 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 C9orf170A2RU37 121 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 A8MXE2 369 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 C16orf97H3BN30 126 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 M0QYG6 137 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 GEMIN2O14893 280 aaKnown RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 ATG12O94817 140 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 OR2F2O95006 317 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 KNG1P01042 644 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 IFNA2P01563 188 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 CD8AP01732 235 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 PGA5P0DJD9 388 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 OR5H8P0DN80 308 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 PGAM2P15259 253 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 RPA2P15927 270 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 ANXA7P20073 488 aaKnown RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 S100A1P23297 94 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 VAMP1P23763 118 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 ZBTB25P24278 435 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 RAB14P61106 215 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 KLRB1Q12918 225 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 SRSF6Q13247 344 aaKnown RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 IKZF1Q13422 519 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 OR2F1Q13607 317 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 CARTPTQ16568 116 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 VWA1Q6PCB0 445 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 HAGHLQ6PII5 290 aaPredicted RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 BIVMQ86UB2 503 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 CXorf67Q86X51 503 aaPredicted RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 ZNF610Q8N9Z0 462 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 POC1AQ8NBT0 407 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 UXS1Q8NBZ7 420 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 OR13C8Q8NGS7 320 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 PRR7Q8TB68 274 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 THAP6Q8TBB0 222 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 SLC25A40Q8TBP6 338 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 KLF14Q8TD94 323 aaPredicted RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 NEK7Q8TDX7 302 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 RND1Q92730 232 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 CMBLQ96DG6 245 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 GALNT14Q96FL9 552 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 MARS2Q96GW9 593 aaKnown RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 ABHD14BQ96IU4 210 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 KIRREL1Q96J84 757 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 FYTTD1Q96QD9 318 aaKnown RBP6.44□□□□□ -1.38
VPS39-204ENST00000561818 SPIN2AQ99865 258 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 SPIN2BQ9BPZ2 258 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 SOX7Q9BT81 388 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 KCNK15Q9H427 330 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 NCOR1P1Q9H4R4 102 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 AK3Q9UIJ7 227 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 GPR132Q9UNW8 380 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 OSGIN2Q9Y236 505 aa6.44□□□□□ -1.38
VPS39-204ENST00000561818 HSPB11Q9Y547 144 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms