RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 NPBWR2P48146 333 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 SNU13P55769 128 aaKnown RBP8.4□□□□□ -1.06
USP3-216ENST00000559873 HOXA4Q00056 320 aaPredicted RBP8.4□□□□□ -1.06
USP3-216ENST00000559873 IKZF1Q13422 519 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 ZNF146Q15072 292 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 FAM189A2Q15884 450 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 NHLRC3Q5JS37 347 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 C1orf100Q5SVJ3 147 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 WDR25Q64LD2 544 aaPredicted RBP8.4□□□□□ -1.06
USP3-216ENST00000559873 CRIP3Q6Q6R5 217 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 BTNL3Q6UXE8 466 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 CROCCP3Q8IVE0 287 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 OSR2Q8N2R0 312 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 TEX29Q8N6K0 151 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 FAM216BQ8N7L0 139 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 ASCC1Q8N9N2 400 aaKnown RBP8.4□□□□□ -1.06
USP3-216ENST00000559873 OR5T2Q8NGG2 359 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 OR4D6Q8NGJ1 314 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 ST8SIA4Q92187 359 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 GAFA1Q96PS6 74 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 FUNDC2Q9BWH2 189 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 SPACA1Q9HBV2 294 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 SLC25A10Q9UBX3 287 aaPredicted RBP8.4□□□□□ -1.06
USP3-216ENST00000559873 KCNS2Q9ULS6 477 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 MED13LQ71F56 2210 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 MTORP42345 2549 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 HIVEP2P31629 2446 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 TRBV23-1A0A0A0MS06 115 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 PPIAL4CA0A0B4J2A2 164 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 A0A0G2JMP0 313 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 A0A0X1KG70 313 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 A0A1W2PPH5 198 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A10PA6NDY2 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A18PA6NE21 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A16PA6NEW6 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A20PA6NIJ5 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A8PA6NJQ4 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A7PA6NKC0 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 NOTOA8MTQ0 251 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A22PA8MWA6 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A12PA8MX19 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A5PA8MXJ8 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A23PA8MXZ1 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM157AC9JC47 383 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 F8VVB4 439 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 F8VWA3 439 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 AIPO00170 330 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 DVL1O14640 695 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 TNFRSF13BO14836 293 aaPredicted RBP8.39□□□□□ -1.07
USP3-216ENST00000559873 ENSAO43768 121 aaKnown RBP8.39□□□□□ -1.07
USP3-216ENST00000559873 CRTAPO75718 401 aaPredicted RBP8.39□□□□□ -1.07
USP3-216ENST00000559873 TGFAP01135 160 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A15PP0C7V4 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A13PP0C7W8 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A14PP0C7W9 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 FAM90A24PP0C7X0 464 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 ARSBP15848 533 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 CFPP27918 469 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 RBMXP38159 391 aaKnown RBP8.39□□□□□ -1.07
USP3-216ENST00000559873 ALDH3B2P48448 385 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 DVL1P1P54792 670 aaPredicted RBP8.39□□□□□ -1.07
USP3-216ENST00000559873 CAV3P56539 151 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 RBM11P57052 281 aaKnown RBP8.39□□□□□ -1.07
USP3-216ENST00000559873 MPV17LQ2QL34 196 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 LYPD2Q6UXB3 125 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 CLEC9AQ6UXN8 241 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 RNF144BQ7Z419 303 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 LYPD6Q86Y78 171 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 Q8NFD4 153 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 OR4M2Q8NGB6 313 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 OR51T1Q8NGJ9 327 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 OR5D13Q8NGL4 314 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 OR10K1Q8NGX5 313 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 KCNG3Q8TAE7 436 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 TMEM186Q96B77 213 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 MSI2Q96DH6 328 aaKnown RBP8.39□□□□□ -1.07
USP3-216ENST00000559873 SEH1LQ96EE3 360 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 POM121Q96HA1 1249 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 NKX3-1Q99801 234 aaPredicted RBP8.39□□□□□ -1.07
USP3-216ENST00000559873 MRI1Q9BV20 369 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 TMEM59Q9BXS4 323 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 LPAR2Q9HBW0 351 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 CTSZQ9UBR2 303 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 LPAR3Q9UBY5 353 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 STEAP1Q9UHE8 339 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 ST3GAL6Q9Y274 331 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 CR1P17927 2039 aa8.39□□□□□ -1.07
USP3-216ENST00000559873 HIVEP1P15822 2718 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 ABCA2Q9BZC7 2435 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 FUOMA2VDF0 154 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 IFITM5A6NNB3 132 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 J3QLI3 93 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 DEGS1O15121 323 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 OR7C1O76099 320 aaPredicted RBP8.38□□□□□ -1.07
USP3-216ENST00000559873 GABARAPO95166 117 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 TFAP2AP05549 437 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 LIPFP07098 398 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 CD37P11049 281 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 MGMTP16455 207 aa8.38□□□□□ -1.07
USP3-216ENST00000559873 NDUFB7P17568 137 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms